Last code update: Feb 8, 202s4

User Inputs

source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al Bistami/AALS Shared DropBox/GEDI Analysis/Combined Experiments/Combined_NonLinear Code/sALS low islet1
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al Bistami/AALS Shared DropBox/GEDI Analysis/Combined Experiments/Combined_NonLinear Code/sALS low islet1

drug: FALSE
drug kept: None
line kept: 7PFJiCTR, 6ZKZiCTR, 2AE8iCTR, 4HUAiALS, 5GBQiALS, 0XLRiALS

multiple_experiments: TRUE
multiple_plates <- FALSE

compare_cellline <- FALSE
compare_class <- TRUE
compare_drug <-FALSE

reference conditions:

## 
## 
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |AALS-Set10 |NA    |0XLRiALS |    18270|      631|
## |AALS-Set10 |NA    |2AE8iCTR |    43784|      492|
## |AALS-Set10 |NA    |5GBQiALS |    14258|      402|
## |AALS-Set11 |NA    |2AE8iCTR |    18734|     2102|
## |AALS-Set11 |NA    |5GBQiALS |     7967|     2241|
## |AALS-Set12 |NA    |2AE8iCTR |    17524|     1090|
## |AALS-Set12 |NA    |5GBQiALS |    16614|      534|
## |AALS-Set13 |NA    |0XLRiALS |    52780|     7013|
## |AALS-Set13 |NA    |2AE8iCTR |    52810|     4391|
## |AALS-Set13 |NA    |5GBQiALS |    21985|     4120|
## |AALS-Set18 |NA    |6ZKZiCTR |    24538|     2934|
## |AALS-Set18 |NA    |7PFJiCTR |    20270|     3212|
## |AALS-Set20 |NA    |0XLRiALS |    71762|    15035|
## |AALS-Set20 |NA    |2AE8iCTR |    79112|    13995|
## |AALS-Set20 |NA    |6ZKZiCTR |    62365|    14876|
## |AALS-Set20 |NA    |7PFJiCTR |    53060|    19275|
## |AALS-Set21 |NA    |2AE8iCTR |    39434|     2669|
## |AALS-Set22 |NA    |2AE8iCTR |    37942|     1927|
## |AALS-Set26 |NA    |0XLRiALS |     7019|     1154|
## |AALS-Set26 |NA    |2AE8iCTR |    16131|      900|
## |AALS-Set26 |NA    |7PFJiCTR |     7559|     2610|
## |AALS-Set29 |NA    |0XLRiALS |    16325|     1183|
## |AALS-Set29 |NA    |2AE8iCTR |     5847|      404|
## |AALS-Set29 |NA    |7PFJiCTR |     9931|      633|
## |AALS-Set33 |NA    |0XLRiALS |     7225|     1077|
## |AALS-Set34 |NA    |0XLRiALS |     1225|       74|
## |AALS-Set35 |NA    |0XLRiALS |     7274|      280|
## |AALS-Set36 |NA    |2AE8iCTR |    15130|      646|
## |AALS-Set36 |NA    |4HUAiALS |    10215|     2042|
## |AALS-Set41 |NA    |4HUAiALS |     3281|      550|
## |AALS-Set44 |NA    |4HUAiALS |     5876|      741|
## |AALS-Set8  |NA    |0XLRiALS |    74055|     2195|
## |AALS-Set8  |NA    |2AE8iCTR |    41421|      657|
## |AALS-Set8  |NA    |5GBQiALS |     9616|      445|
## 
## 
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |AALS-Set10 |NA    |0XLRiALS |1         |0    |     2016|       25|
## |AALS-Set10 |NA    |0XLRiALS |2         |24   |     2238|       31|
## |AALS-Set10 |NA    |0XLRiALS |3         |48   |     2439|       45|
## |AALS-Set10 |NA    |0XLRiALS |4         |72   |     2448|       32|
## |AALS-Set10 |NA    |0XLRiALS |5         |96   |     2310|       26|
## |AALS-Set10 |NA    |0XLRiALS |6         |120  |     2246|       33|
## |AALS-Set10 |NA    |0XLRiALS |7         |144  |     2219|       73|
## |AALS-Set10 |NA    |0XLRiALS |8         |168  |     1430|      153|
## |AALS-Set10 |NA    |0XLRiALS |9         |192  |      924|      213|
## |AALS-Set10 |NA    |2AE8iCTR |1         |0    |     4231|       57|
## |AALS-Set10 |NA    |2AE8iCTR |2         |24   |     5027|       51|
## |AALS-Set10 |NA    |2AE8iCTR |3         |48   |     5492|       49|
## |AALS-Set10 |NA    |2AE8iCTR |4         |72   |     6101|       49|
## |AALS-Set10 |NA    |2AE8iCTR |5         |96   |     5409|       44|
## |AALS-Set10 |NA    |2AE8iCTR |6         |120  |     4980|       66|
## |AALS-Set10 |NA    |2AE8iCTR |7         |144  |     4561|       66|
## |AALS-Set10 |NA    |2AE8iCTR |8         |168  |     4114|       49|
## |AALS-Set10 |NA    |2AE8iCTR |9         |192  |     3869|       61|
## |AALS-Set10 |NA    |5GBQiALS |1         |0    |     1360|       18|
## |AALS-Set10 |NA    |5GBQiALS |2         |24   |     1504|       22|
## |AALS-Set10 |NA    |5GBQiALS |3         |48   |     1694|       34|
## |AALS-Set10 |NA    |5GBQiALS |4         |72   |     1699|       29|
## |AALS-Set10 |NA    |5GBQiALS |5         |96   |     1657|       35|
## |AALS-Set10 |NA    |5GBQiALS |6         |120  |     1689|       32|
## |AALS-Set10 |NA    |5GBQiALS |7         |144  |     1684|       53|
## |AALS-Set10 |NA    |5GBQiALS |8         |168  |     1566|       93|
## |AALS-Set10 |NA    |5GBQiALS |9         |192  |     1405|       86|
## |AALS-Set11 |NA    |2AE8iCTR |1         |0    |     1680|      101|
## |AALS-Set11 |NA    |2AE8iCTR |2         |24   |     2020|      143|
## |AALS-Set11 |NA    |2AE8iCTR |3         |48   |     1968|      201|
## |AALS-Set11 |NA    |2AE8iCTR |4         |72   |     2243|      177|
## |AALS-Set11 |NA    |2AE8iCTR |5         |96   |     2323|      213|
## |AALS-Set11 |NA    |2AE8iCTR |6         |120  |     2118|      262|
## |AALS-Set11 |NA    |2AE8iCTR |7         |144  |     2049|      392|
## |AALS-Set11 |NA    |2AE8iCTR |8         |168  |     2043|      340|
## |AALS-Set11 |NA    |2AE8iCTR |9         |192  |     2290|      273|
## |AALS-Set11 |NA    |5GBQiALS |1         |0    |      605|       89|
## |AALS-Set11 |NA    |5GBQiALS |2         |24   |      673|      214|
## |AALS-Set11 |NA    |5GBQiALS |3         |48   |      678|      242|
## |AALS-Set11 |NA    |5GBQiALS |4         |72   |      888|      193|
## |AALS-Set11 |NA    |5GBQiALS |5         |96   |      879|      253|
## |AALS-Set11 |NA    |5GBQiALS |6         |120  |      928|      330|
## |AALS-Set11 |NA    |5GBQiALS |7         |144  |      952|      409|
## |AALS-Set11 |NA    |5GBQiALS |8         |168  |     1165|      235|
## |AALS-Set11 |NA    |5GBQiALS |9         |192  |     1199|      276|
## |AALS-Set12 |NA    |2AE8iCTR |1         |0    |     2225|       49|
## |AALS-Set12 |NA    |2AE8iCTR |2         |24   |     2465|       48|
## |AALS-Set12 |NA    |2AE8iCTR |3         |48   |     2674|       43|
## |AALS-Set12 |NA    |2AE8iCTR |4         |72   |     1848|       64|
## |AALS-Set12 |NA    |2AE8iCTR |5         |96   |     1697|      106|
## |AALS-Set12 |NA    |2AE8iCTR |6         |120  |     1558|      136|
## |AALS-Set12 |NA    |2AE8iCTR |7         |144  |     2042|      132|
## |AALS-Set12 |NA    |2AE8iCTR |8         |168  |     1448|      211|
## |AALS-Set12 |NA    |2AE8iCTR |9         |192  |     1567|      301|
## |AALS-Set12 |NA    |5GBQiALS |1         |0    |     1932|       43|
## |AALS-Set12 |NA    |5GBQiALS |2         |24   |     2344|       39|
## |AALS-Set12 |NA    |5GBQiALS |3         |48   |     2187|       44|
## |AALS-Set12 |NA    |5GBQiALS |4         |72   |     1758|       63|
## |AALS-Set12 |NA    |5GBQiALS |5         |96   |     1696|       56|
## |AALS-Set12 |NA    |5GBQiALS |6         |120  |     1650|       70|
## |AALS-Set12 |NA    |5GBQiALS |7         |144  |     1984|       39|
## |AALS-Set12 |NA    |5GBQiALS |8         |168  |     1540|       70|
## |AALS-Set12 |NA    |5GBQiALS |9         |192  |     1523|      110|
## |AALS-Set13 |NA    |0XLRiALS |1         |0    |     6710|      407|
## |AALS-Set13 |NA    |0XLRiALS |2         |24   |     7029|      569|
## |AALS-Set13 |NA    |0XLRiALS |3         |48   |     7419|      927|
## |AALS-Set13 |NA    |0XLRiALS |4         |72   |     7404|      870|
## |AALS-Set13 |NA    |0XLRiALS |5         |96   |     6754|      977|
## |AALS-Set13 |NA    |0XLRiALS |6         |120  |     6458|     1106|
## |AALS-Set13 |NA    |0XLRiALS |7         |144  |     5962|     1164|
## |AALS-Set13 |NA    |0XLRiALS |8         |168  |     5044|      993|
## |AALS-Set13 |NA    |2AE8iCTR |1         |0    |     6393|      295|
## |AALS-Set13 |NA    |2AE8iCTR |2         |24   |     6516|      400|
## |AALS-Set13 |NA    |2AE8iCTR |3         |48   |     6855|      579|
## |AALS-Set13 |NA    |2AE8iCTR |4         |72   |     7126|      458|
## |AALS-Set13 |NA    |2AE8iCTR |5         |96   |     6876|      602|
## |AALS-Set13 |NA    |2AE8iCTR |6         |120  |     6640|      614|
## |AALS-Set13 |NA    |2AE8iCTR |7         |144  |     6601|      629|
## |AALS-Set13 |NA    |2AE8iCTR |8         |168  |     5803|      814|
## |AALS-Set13 |NA    |5GBQiALS |1         |0    |     3475|      379|
## |AALS-Set13 |NA    |5GBQiALS |2         |24   |     3196|      435|
## |AALS-Set13 |NA    |5GBQiALS |3         |48   |     3220|      557|
## |AALS-Set13 |NA    |5GBQiALS |4         |72   |     3290|      523|
## |AALS-Set13 |NA    |5GBQiALS |5         |96   |     2765|      512|
## |AALS-Set13 |NA    |5GBQiALS |6         |120  |     2419|      543|
## |AALS-Set13 |NA    |5GBQiALS |7         |144  |     2032|      658|
## |AALS-Set13 |NA    |5GBQiALS |8         |168  |     1588|      513|
## |AALS-Set18 |NA    |6ZKZiCTR |1         |0    |     2172|      258|
## |AALS-Set18 |NA    |6ZKZiCTR |2         |24   |     2290|      278|
## |AALS-Set18 |NA    |6ZKZiCTR |3         |48   |     2657|      295|
## |AALS-Set18 |NA    |6ZKZiCTR |4         |72   |     2794|      316|
## |AALS-Set18 |NA    |6ZKZiCTR |5         |96   |     3052|      353|
## |AALS-Set18 |NA    |6ZKZiCTR |6         |120  |     2817|      340|
## |AALS-Set18 |NA    |6ZKZiCTR |7         |144  |     3035|      373|
## |AALS-Set18 |NA    |6ZKZiCTR |8         |168  |     3138|      386|
## |AALS-Set18 |NA    |6ZKZiCTR |9         |192  |     2583|      335|
## |AALS-Set18 |NA    |7PFJiCTR |1         |0    |     1890|      288|
## |AALS-Set18 |NA    |7PFJiCTR |2         |24   |     2027|      317|
## |AALS-Set18 |NA    |7PFJiCTR |3         |48   |     2308|      373|
## |AALS-Set18 |NA    |7PFJiCTR |4         |72   |     2233|      402|
## |AALS-Set18 |NA    |7PFJiCTR |5         |96   |     2290|      428|
## |AALS-Set18 |NA    |7PFJiCTR |6         |120  |     2435|      298|
## |AALS-Set18 |NA    |7PFJiCTR |7         |144  |     2189|      364|
## |AALS-Set18 |NA    |7PFJiCTR |8         |168  |     2183|      451|
## |AALS-Set18 |NA    |7PFJiCTR |9         |192  |     2715|      291|
## |AALS-Set20 |NA    |0XLRiALS |1         |0    |     5929|      991|
## |AALS-Set20 |NA    |0XLRiALS |2         |24   |     7783|     1388|
## |AALS-Set20 |NA    |0XLRiALS |3         |48   |     8923|     1659|
## |AALS-Set20 |NA    |0XLRiALS |4         |72   |    10014|     1823|
## |AALS-Set20 |NA    |0XLRiALS |5         |96   |    10003|     1857|
## |AALS-Set20 |NA    |0XLRiALS |6         |120  |    10069|     1989|
## |AALS-Set20 |NA    |0XLRiALS |7         |144  |     9775|     2440|
## |AALS-Set20 |NA    |0XLRiALS |8         |168  |     9266|     2888|
## |AALS-Set20 |NA    |2AE8iCTR |1         |0    |     8606|      802|
## |AALS-Set20 |NA    |2AE8iCTR |2         |24   |    10058|     1043|
## |AALS-Set20 |NA    |2AE8iCTR |3         |48   |    10329|     1246|
## |AALS-Set20 |NA    |2AE8iCTR |4         |72   |    10766|     1601|
## |AALS-Set20 |NA    |2AE8iCTR |5         |96   |    10365|     1782|
## |AALS-Set20 |NA    |2AE8iCTR |6         |120  |    10311|     2111|
## |AALS-Set20 |NA    |2AE8iCTR |7         |144  |     9679|     2448|
## |AALS-Set20 |NA    |2AE8iCTR |8         |168  |     8998|     2962|
## |AALS-Set20 |NA    |6ZKZiCTR |1         |0    |     6107|     1199|
## |AALS-Set20 |NA    |6ZKZiCTR |2         |24   |     6619|     1297|
## |AALS-Set20 |NA    |6ZKZiCTR |3         |48   |     7272|     1661|
## |AALS-Set20 |NA    |6ZKZiCTR |4         |72   |     8133|     1747|
## |AALS-Set20 |NA    |6ZKZiCTR |5         |96   |     8352|     1902|
## |AALS-Set20 |NA    |6ZKZiCTR |6         |120  |     8686|     2042|
## |AALS-Set20 |NA    |6ZKZiCTR |7         |144  |     8712|     2364|
## |AALS-Set20 |NA    |6ZKZiCTR |8         |168  |     8484|     2664|
## |AALS-Set20 |NA    |7PFJiCTR |1         |0    |     6143|     1439|
## |AALS-Set20 |NA    |7PFJiCTR |2         |24   |     6856|     1633|
## |AALS-Set20 |NA    |7PFJiCTR |3         |48   |     6913|     1941|
## |AALS-Set20 |NA    |7PFJiCTR |4         |72   |     7559|     2362|
## |AALS-Set20 |NA    |7PFJiCTR |5         |96   |     7225|     2147|
## |AALS-Set20 |NA    |7PFJiCTR |6         |120  |     7047|     2888|
## |AALS-Set20 |NA    |7PFJiCTR |7         |144  |     6212|     3286|
## |AALS-Set20 |NA    |7PFJiCTR |8         |168  |     5105|     3579|
## |AALS-Set21 |NA    |2AE8iCTR |1         |0    |     4213|      145|
## |AALS-Set21 |NA    |2AE8iCTR |2         |24   |     4357|      153|
## |AALS-Set21 |NA    |2AE8iCTR |3         |48   |     4701|      174|
## |AALS-Set21 |NA    |2AE8iCTR |4         |72   |     4575|      119|
## |AALS-Set21 |NA    |2AE8iCTR |5         |96   |     4254|      201|
## |AALS-Set21 |NA    |2AE8iCTR |6         |120  |     4401|      237|
## |AALS-Set21 |NA    |2AE8iCTR |7         |144  |     4059|      301|
## |AALS-Set21 |NA    |2AE8iCTR |8         |168  |     2745|      492|
## |AALS-Set21 |NA    |2AE8iCTR |9         |192  |     3086|      423|
## |AALS-Set21 |NA    |2AE8iCTR |11        |216  |     3043|      424|
## |AALS-Set22 |NA    |2AE8iCTR |1         |0    |     5663|       38|
## |AALS-Set22 |NA    |2AE8iCTR |2         |24   |     6091|       71|
## |AALS-Set22 |NA    |2AE8iCTR |3         |48   |     4771|       69|
## |AALS-Set22 |NA    |2AE8iCTR |4         |72   |     5026|       84|
## |AALS-Set22 |NA    |2AE8iCTR |5         |96   |     3912|      106|
## |AALS-Set22 |NA    |2AE8iCTR |6         |120  |     3471|      156|
## |AALS-Set22 |NA    |2AE8iCTR |7         |144  |     3221|      204|
## |AALS-Set22 |NA    |2AE8iCTR |8         |168  |     1548|      340|
## |AALS-Set22 |NA    |2AE8iCTR |9         |192  |     2029|      361|
## |AALS-Set22 |NA    |2AE8iCTR |11        |216  |     2210|      498|
## |AALS-Set26 |NA    |0XLRiALS |1         |0    |     1017|       52|
## |AALS-Set26 |NA    |0XLRiALS |2         |24   |     1102|       50|
## |AALS-Set26 |NA    |0XLRiALS |3         |48   |     1016|       46|
## |AALS-Set26 |NA    |0XLRiALS |4         |72   |      881|       66|
## |AALS-Set26 |NA    |0XLRiALS |5         |96   |      850|       99|
## |AALS-Set26 |NA    |0XLRiALS |6         |120  |      643|      179|
## |AALS-Set26 |NA    |0XLRiALS |7         |144  |      488|      227|
## |AALS-Set26 |NA    |0XLRiALS |8         |168  |      515|      219|
## |AALS-Set26 |NA    |0XLRiALS |9         |192  |      507|      216|
## |AALS-Set26 |NA    |2AE8iCTR |1         |0    |     2018|       69|
## |AALS-Set26 |NA    |2AE8iCTR |2         |24   |     2366|       53|
## |AALS-Set26 |NA    |2AE8iCTR |3         |48   |     2260|       55|
## |AALS-Set26 |NA    |2AE8iCTR |4         |72   |     2040|       62|
## |AALS-Set26 |NA    |2AE8iCTR |5         |96   |     1995|       80|
## |AALS-Set26 |NA    |2AE8iCTR |6         |120  |     1405|      121|
## |AALS-Set26 |NA    |2AE8iCTR |7         |144  |     1184|      157|
## |AALS-Set26 |NA    |2AE8iCTR |8         |168  |     1360|      159|
## |AALS-Set26 |NA    |2AE8iCTR |9         |192  |     1503|      144|
## |AALS-Set26 |NA    |7PFJiCTR |1         |0    |     1124|      198|
## |AALS-Set26 |NA    |7PFJiCTR |2         |24   |     1167|      136|
## |AALS-Set26 |NA    |7PFJiCTR |3         |48   |     1051|      138|
## |AALS-Set26 |NA    |7PFJiCTR |4         |72   |      890|      183|
## |AALS-Set26 |NA    |7PFJiCTR |5         |96   |      834|      218|
## |AALS-Set26 |NA    |7PFJiCTR |6         |120  |      614|      411|
## |AALS-Set26 |NA    |7PFJiCTR |7         |144  |      565|      508|
## |AALS-Set26 |NA    |7PFJiCTR |8         |168  |      629|      429|
## |AALS-Set26 |NA    |7PFJiCTR |9         |192  |      685|      389|
## |AALS-Set29 |NA    |0XLRiALS |1         |0    |     2769|       90|
## |AALS-Set29 |NA    |0XLRiALS |2         |24   |     2256|       94|
## |AALS-Set29 |NA    |0XLRiALS |3         |48   |     2478|      107|
## |AALS-Set29 |NA    |0XLRiALS |6         |120  |     1621|      125|
## |AALS-Set29 |NA    |0XLRiALS |7         |144  |     1899|      151|
## |AALS-Set29 |NA    |0XLRiALS |8         |168  |     1874|      164|
## |AALS-Set29 |NA    |0XLRiALS |9         |192  |     1738|      216|
## |AALS-Set29 |NA    |0XLRiALS |11        |216  |     1690|      236|
## |AALS-Set29 |NA    |2AE8iCTR |1         |0    |     1008|       37|
## |AALS-Set29 |NA    |2AE8iCTR |2         |24   |      784|       33|
## |AALS-Set29 |NA    |2AE8iCTR |3         |48   |      927|       26|
## |AALS-Set29 |NA    |2AE8iCTR |6         |120  |      561|       43|
## |AALS-Set29 |NA    |2AE8iCTR |7         |144  |      675|       62|
## |AALS-Set29 |NA    |2AE8iCTR |8         |168  |      671|       62|
## |AALS-Set29 |NA    |2AE8iCTR |9         |192  |      600|       70|
## |AALS-Set29 |NA    |2AE8iCTR |11        |216  |      621|       71|
## |AALS-Set29 |NA    |7PFJiCTR |1         |0    |     1338|       34|
## |AALS-Set29 |NA    |7PFJiCTR |2         |24   |     1236|       35|
## |AALS-Set29 |NA    |7PFJiCTR |3         |48   |     1354|       33|
## |AALS-Set29 |NA    |7PFJiCTR |6         |120  |     1102|       68|
## |AALS-Set29 |NA    |7PFJiCTR |7         |144  |     1241|      105|
## |AALS-Set29 |NA    |7PFJiCTR |8         |168  |     1290|       82|
## |AALS-Set29 |NA    |7PFJiCTR |9         |192  |     1211|      131|
## |AALS-Set29 |NA    |7PFJiCTR |11        |216  |     1159|      145|
## |AALS-Set33 |NA    |0XLRiALS |1         |0    |     1491|      217|
## |AALS-Set33 |NA    |0XLRiALS |2         |24   |     1362|      204|
## |AALS-Set33 |NA    |0XLRiALS |5         |96   |     1178|      115|
## |AALS-Set33 |NA    |0XLRiALS |6         |120  |     1198|       75|
## |AALS-Set33 |NA    |0XLRiALS |8         |168  |      801|      107|
## |AALS-Set33 |NA    |0XLRiALS |9         |192  |      631|      116|
## |AALS-Set33 |NA    |0XLRiALS |11        |216  |      564|      243|
## |AALS-Set34 |NA    |0XLRiALS |1         |0    |      269|       17|
## |AALS-Set34 |NA    |0XLRiALS |5         |96   |      299|       14|
## |AALS-Set34 |NA    |0XLRiALS |6         |120  |      314|       26|
## |AALS-Set34 |NA    |0XLRiALS |8         |168  |      343|       17|
## |AALS-Set35 |NA    |0XLRiALS |1         |0    |      968|       26|
## |AALS-Set35 |NA    |0XLRiALS |2         |24   |      884|       29|
## |AALS-Set35 |NA    |0XLRiALS |3         |48   |     1030|       39|
## |AALS-Set35 |NA    |0XLRiALS |4         |72   |      973|       37|
## |AALS-Set35 |NA    |0XLRiALS |5         |96   |      923|       32|
## |AALS-Set35 |NA    |0XLRiALS |6         |120  |      851|       47|
## |AALS-Set35 |NA    |0XLRiALS |7         |144  |      756|       43|
## |AALS-Set35 |NA    |0XLRiALS |8         |168  |      889|       27|
## |AALS-Set36 |NA    |2AE8iCTR |1         |0    |     1784|       65|
## |AALS-Set36 |NA    |2AE8iCTR |2         |24   |     2024|       50|
## |AALS-Set36 |NA    |2AE8iCTR |3         |48   |     1754|       59|
## |AALS-Set36 |NA    |2AE8iCTR |4         |72   |     2094|       96|
## |AALS-Set36 |NA    |2AE8iCTR |5         |96   |     2104|       88|
## |AALS-Set36 |NA    |2AE8iCTR |6         |120  |     2041|      104|
## |AALS-Set36 |NA    |2AE8iCTR |7         |144  |     1658|       97|
## |AALS-Set36 |NA    |2AE8iCTR |8         |168  |     1671|       87|
## |AALS-Set36 |NA    |4HUAiALS |1         |0    |     1401|      144|
## |AALS-Set36 |NA    |4HUAiALS |2         |24   |     1407|      167|
## |AALS-Set36 |NA    |4HUAiALS |3         |48   |     1379|      177|
## |AALS-Set36 |NA    |4HUAiALS |4         |72   |     1291|      197|
## |AALS-Set36 |NA    |4HUAiALS |5         |96   |     1204|      302|
## |AALS-Set36 |NA    |4HUAiALS |6         |120  |     1161|      343|
## |AALS-Set36 |NA    |4HUAiALS |7         |144  |     1250|      323|
## |AALS-Set36 |NA    |4HUAiALS |8         |168  |     1122|      389|
## |AALS-Set41 |NA    |4HUAiALS |1         |0    |      704|       32|
## |AALS-Set41 |NA    |4HUAiALS |2         |24   |      709|       57|
## |AALS-Set41 |NA    |4HUAiALS |4         |72   |      545|      101|
## |AALS-Set41 |NA    |4HUAiALS |5         |96   |      658|      120|
## |AALS-Set41 |NA    |4HUAiALS |8         |168  |      357|      127|
## |AALS-Set41 |NA    |4HUAiALS |9         |192  |      308|      113|
## |AALS-Set44 |NA    |4HUAiALS |1         |0    |      647|      245|
## |AALS-Set44 |NA    |4HUAiALS |2         |24   |     1163|       72|
## |AALS-Set44 |NA    |4HUAiALS |3         |48   |     1283|       73|
## |AALS-Set44 |NA    |4HUAiALS |4         |72   |     1262|       83|
## |AALS-Set44 |NA    |4HUAiALS |5         |96   |      786|      144|
## |AALS-Set44 |NA    |4HUAiALS |8         |168  |      735|      124|
## |AALS-Set8  |NA    |0XLRiALS |1         |0    |     6471|      186|
## |AALS-Set8  |NA    |0XLRiALS |2         |24   |     7160|      160|
## |AALS-Set8  |NA    |0XLRiALS |3         |48   |     8741|      146|
## |AALS-Set8  |NA    |0XLRiALS |4         |72   |     9822|      189|
## |AALS-Set8  |NA    |0XLRiALS |5         |96   |     9937|      204|
## |AALS-Set8  |NA    |0XLRiALS |6         |120  |    10702|      230|
## |AALS-Set8  |NA    |0XLRiALS |7         |144  |    10703|      388|
## |AALS-Set8  |NA    |0XLRiALS |8         |168  |    10519|      692|
## |AALS-Set8  |NA    |2AE8iCTR |1         |0    |     4639|       70|
## |AALS-Set8  |NA    |2AE8iCTR |2         |24   |     4800|       69|
## |AALS-Set8  |NA    |2AE8iCTR |3         |48   |     5445|       60|
## |AALS-Set8  |NA    |2AE8iCTR |4         |72   |     5499|       59|
## |AALS-Set8  |NA    |2AE8iCTR |5         |96   |     5431|       70|
## |AALS-Set8  |NA    |2AE8iCTR |6         |120  |     5246|       75|
## |AALS-Set8  |NA    |2AE8iCTR |7         |144  |     5245|       94|
## |AALS-Set8  |NA    |2AE8iCTR |8         |168  |     5116|      160|
## |AALS-Set8  |NA    |5GBQiALS |1         |0    |      984|       67|
## |AALS-Set8  |NA    |5GBQiALS |2         |24   |      992|       71|
## |AALS-Set8  |NA    |5GBQiALS |3         |48   |     1099|       66|
## |AALS-Set8  |NA    |5GBQiALS |4         |72   |     1184|       66|
## |AALS-Set8  |NA    |5GBQiALS |5         |96   |     1229|       49|
## |AALS-Set8  |NA    |5GBQiALS |6         |120  |     1264|       33|
## |AALS-Set8  |NA    |5GBQiALS |7         |144  |     1387|       46|
## |AALS-Set8  |NA    |5GBQiALS |8         |168  |     1477|       47|
## 
## 
## |Experiment |Plate |Class |Timepoint | sum_live| sum_dead|
## |:----------|:-----|:-----|:---------|--------:|--------:|
## |AALS-Set10 |NA    |0     |1         |     4231|       57|
## |AALS-Set10 |NA    |0     |2         |     5027|       51|
## |AALS-Set10 |NA    |0     |3         |     5492|       49|
## |AALS-Set10 |NA    |0     |4         |     6101|       49|
## |AALS-Set10 |NA    |0     |5         |     5409|       44|
## |AALS-Set10 |NA    |0     |6         |     4980|       66|
## |AALS-Set10 |NA    |0     |7         |     4561|       66|
## |AALS-Set10 |NA    |0     |8         |     4114|       49|
## |AALS-Set10 |NA    |0     |9         |     3869|       61|
## |AALS-Set10 |NA    |1     |1         |     3376|       43|
## |AALS-Set10 |NA    |1     |2         |     3742|       53|
## |AALS-Set10 |NA    |1     |3         |     4133|       79|
## |AALS-Set10 |NA    |1     |4         |     4147|       61|
## |AALS-Set10 |NA    |1     |5         |     3967|       61|
## |AALS-Set10 |NA    |1     |6         |     3935|       65|
## |AALS-Set10 |NA    |1     |7         |     3903|      126|
## |AALS-Set10 |NA    |1     |8         |     2996|      246|
## |AALS-Set10 |NA    |1     |9         |     2329|      299|
## |AALS-Set11 |NA    |0     |1         |     1680|      101|
## |AALS-Set11 |NA    |0     |2         |     2020|      143|
## |AALS-Set11 |NA    |0     |3         |     1968|      201|
## |AALS-Set11 |NA    |0     |4         |     2243|      177|
## |AALS-Set11 |NA    |0     |5         |     2323|      213|
## |AALS-Set11 |NA    |0     |6         |     2118|      262|
## |AALS-Set11 |NA    |0     |7         |     2049|      392|
## |AALS-Set11 |NA    |0     |8         |     2043|      340|
## |AALS-Set11 |NA    |0     |9         |     2290|      273|
## |AALS-Set11 |NA    |1     |1         |      605|       89|
## |AALS-Set11 |NA    |1     |2         |      673|      214|
## |AALS-Set11 |NA    |1     |3         |      678|      242|
## |AALS-Set11 |NA    |1     |4         |      888|      193|
## |AALS-Set11 |NA    |1     |5         |      879|      253|
## |AALS-Set11 |NA    |1     |6         |      928|      330|
## |AALS-Set11 |NA    |1     |7         |      952|      409|
## |AALS-Set11 |NA    |1     |8         |     1165|      235|
## |AALS-Set11 |NA    |1     |9         |     1199|      276|
## |AALS-Set12 |NA    |0     |1         |     2225|       49|
## |AALS-Set12 |NA    |0     |2         |     2465|       48|
## |AALS-Set12 |NA    |0     |3         |     2674|       43|
## |AALS-Set12 |NA    |0     |4         |     1848|       64|
## |AALS-Set12 |NA    |0     |5         |     1697|      106|
## |AALS-Set12 |NA    |0     |6         |     1558|      136|
## |AALS-Set12 |NA    |0     |7         |     2042|      132|
## |AALS-Set12 |NA    |0     |8         |     1448|      211|
## |AALS-Set12 |NA    |0     |9         |     1567|      301|
## |AALS-Set12 |NA    |1     |1         |     1932|       43|
## |AALS-Set12 |NA    |1     |2         |     2344|       39|
## |AALS-Set12 |NA    |1     |3         |     2187|       44|
## |AALS-Set12 |NA    |1     |4         |     1758|       63|
## |AALS-Set12 |NA    |1     |5         |     1696|       56|
## |AALS-Set12 |NA    |1     |6         |     1650|       70|
## |AALS-Set12 |NA    |1     |7         |     1984|       39|
## |AALS-Set12 |NA    |1     |8         |     1540|       70|
## |AALS-Set12 |NA    |1     |9         |     1523|      110|
## |AALS-Set13 |NA    |0     |1         |     6393|      295|
## |AALS-Set13 |NA    |0     |2         |     6516|      400|
## |AALS-Set13 |NA    |0     |3         |     6855|      579|
## |AALS-Set13 |NA    |0     |4         |     7126|      458|
## |AALS-Set13 |NA    |0     |5         |     6876|      602|
## |AALS-Set13 |NA    |0     |6         |     6640|      614|
## |AALS-Set13 |NA    |0     |7         |     6601|      629|
## |AALS-Set13 |NA    |0     |8         |     5803|      814|
## |AALS-Set13 |NA    |1     |1         |    10185|      786|
## |AALS-Set13 |NA    |1     |2         |    10225|     1004|
## |AALS-Set13 |NA    |1     |3         |    10639|     1484|
## |AALS-Set13 |NA    |1     |4         |    10694|     1393|
## |AALS-Set13 |NA    |1     |5         |     9519|     1489|
## |AALS-Set13 |NA    |1     |6         |     8877|     1649|
## |AALS-Set13 |NA    |1     |7         |     7994|     1822|
## |AALS-Set13 |NA    |1     |8         |     6632|     1506|
## |AALS-Set18 |NA    |0     |1         |     4062|      546|
## |AALS-Set18 |NA    |0     |2         |     4317|      595|
## |AALS-Set18 |NA    |0     |3         |     4965|      668|
## |AALS-Set18 |NA    |0     |4         |     5027|      718|
## |AALS-Set18 |NA    |0     |5         |     5342|      781|
## |AALS-Set18 |NA    |0     |6         |     5252|      638|
## |AALS-Set18 |NA    |0     |7         |     5224|      737|
## |AALS-Set18 |NA    |0     |8         |     5321|      837|
## |AALS-Set18 |NA    |0     |9         |     5298|      626|
## |AALS-Set20 |NA    |0     |1         |    20856|     3440|
## |AALS-Set20 |NA    |0     |2         |    23533|     3973|
## |AALS-Set20 |NA    |0     |3         |    24514|     4848|
## |AALS-Set20 |NA    |0     |4         |    26458|     5710|
## |AALS-Set20 |NA    |0     |5         |    25942|     5831|
## |AALS-Set20 |NA    |0     |6         |    26044|     7041|
## |AALS-Set20 |NA    |0     |7         |    24603|     8098|
## |AALS-Set20 |NA    |0     |8         |    22587|     9205|
## |AALS-Set20 |NA    |1     |1         |     5929|      991|
## |AALS-Set20 |NA    |1     |2         |     7783|     1388|
## |AALS-Set20 |NA    |1     |3         |     8923|     1659|
## |AALS-Set20 |NA    |1     |4         |    10014|     1823|
## |AALS-Set20 |NA    |1     |5         |    10003|     1857|
## |AALS-Set20 |NA    |1     |6         |    10069|     1989|
## |AALS-Set20 |NA    |1     |7         |     9775|     2440|
## |AALS-Set20 |NA    |1     |8         |     9266|     2888|
## |AALS-Set21 |NA    |0     |1         |     4213|      145|
## |AALS-Set21 |NA    |0     |2         |     4357|      153|
## |AALS-Set21 |NA    |0     |3         |     4701|      174|
## |AALS-Set21 |NA    |0     |4         |     4575|      119|
## |AALS-Set21 |NA    |0     |5         |     4254|      201|
## |AALS-Set21 |NA    |0     |6         |     4401|      237|
## |AALS-Set21 |NA    |0     |7         |     4059|      301|
## |AALS-Set21 |NA    |0     |8         |     2745|      492|
## |AALS-Set21 |NA    |0     |9         |     3086|      423|
## |AALS-Set21 |NA    |0     |11        |     3043|      424|
## |AALS-Set22 |NA    |0     |1         |     5663|       38|
## |AALS-Set22 |NA    |0     |2         |     6091|       71|
## |AALS-Set22 |NA    |0     |3         |     4771|       69|
## |AALS-Set22 |NA    |0     |4         |     5026|       84|
## |AALS-Set22 |NA    |0     |5         |     3912|      106|
## |AALS-Set22 |NA    |0     |6         |     3471|      156|
## |AALS-Set22 |NA    |0     |7         |     3221|      204|
## |AALS-Set22 |NA    |0     |8         |     1548|      340|
## |AALS-Set22 |NA    |0     |9         |     2029|      361|
## |AALS-Set22 |NA    |0     |11        |     2210|      498|
## |AALS-Set26 |NA    |0     |1         |     3142|      267|
## |AALS-Set26 |NA    |0     |2         |     3533|      189|
## |AALS-Set26 |NA    |0     |3         |     3311|      193|
## |AALS-Set26 |NA    |0     |4         |     2930|      245|
## |AALS-Set26 |NA    |0     |5         |     2829|      298|
## |AALS-Set26 |NA    |0     |6         |     2019|      532|
## |AALS-Set26 |NA    |0     |7         |     1749|      665|
## |AALS-Set26 |NA    |0     |8         |     1989|      588|
## |AALS-Set26 |NA    |0     |9         |     2188|      533|
## |AALS-Set26 |NA    |1     |1         |     1017|       52|
## |AALS-Set26 |NA    |1     |2         |     1102|       50|
## |AALS-Set26 |NA    |1     |3         |     1016|       46|
## |AALS-Set26 |NA    |1     |4         |      881|       66|
## |AALS-Set26 |NA    |1     |5         |      850|       99|
## |AALS-Set26 |NA    |1     |6         |      643|      179|
## |AALS-Set26 |NA    |1     |7         |      488|      227|
## |AALS-Set26 |NA    |1     |8         |      515|      219|
## |AALS-Set26 |NA    |1     |9         |      507|      216|
## |AALS-Set29 |NA    |0     |1         |     2346|       71|
## |AALS-Set29 |NA    |0     |2         |     2020|       68|
## |AALS-Set29 |NA    |0     |3         |     2281|       59|
## |AALS-Set29 |NA    |0     |6         |     1663|      111|
## |AALS-Set29 |NA    |0     |7         |     1916|      167|
## |AALS-Set29 |NA    |0     |8         |     1961|      144|
## |AALS-Set29 |NA    |0     |9         |     1811|      201|
## |AALS-Set29 |NA    |0     |11        |     1780|      216|
## |AALS-Set29 |NA    |1     |1         |     2769|       90|
## |AALS-Set29 |NA    |1     |2         |     2256|       94|
## |AALS-Set29 |NA    |1     |3         |     2478|      107|
## |AALS-Set29 |NA    |1     |6         |     1621|      125|
## |AALS-Set29 |NA    |1     |7         |     1899|      151|
## |AALS-Set29 |NA    |1     |8         |     1874|      164|
## |AALS-Set29 |NA    |1     |9         |     1738|      216|
## |AALS-Set29 |NA    |1     |11        |     1690|      236|
## |AALS-Set33 |NA    |1     |1         |     1491|      217|
## |AALS-Set33 |NA    |1     |2         |     1362|      204|
## |AALS-Set33 |NA    |1     |5         |     1178|      115|
## |AALS-Set33 |NA    |1     |6         |     1198|       75|
## |AALS-Set33 |NA    |1     |8         |      801|      107|
## |AALS-Set33 |NA    |1     |9         |      631|      116|
## |AALS-Set33 |NA    |1     |11        |      564|      243|
## |AALS-Set34 |NA    |1     |1         |      269|       17|
## |AALS-Set34 |NA    |1     |5         |      299|       14|
## |AALS-Set34 |NA    |1     |6         |      314|       26|
## |AALS-Set34 |NA    |1     |8         |      343|       17|
## |AALS-Set35 |NA    |1     |1         |      968|       26|
## |AALS-Set35 |NA    |1     |2         |      884|       29|
## |AALS-Set35 |NA    |1     |3         |     1030|       39|
## |AALS-Set35 |NA    |1     |4         |      973|       37|
## |AALS-Set35 |NA    |1     |5         |      923|       32|
## |AALS-Set35 |NA    |1     |6         |      851|       47|
## |AALS-Set35 |NA    |1     |7         |      756|       43|
## |AALS-Set35 |NA    |1     |8         |      889|       27|
## |AALS-Set36 |NA    |0     |1         |     1784|       65|
## |AALS-Set36 |NA    |0     |2         |     2024|       50|
## |AALS-Set36 |NA    |0     |3         |     1754|       59|
## |AALS-Set36 |NA    |0     |4         |     2094|       96|
## |AALS-Set36 |NA    |0     |5         |     2104|       88|
## |AALS-Set36 |NA    |0     |6         |     2041|      104|
## |AALS-Set36 |NA    |0     |7         |     1658|       97|
## |AALS-Set36 |NA    |0     |8         |     1671|       87|
## |AALS-Set36 |NA    |1     |1         |     1401|      144|
## |AALS-Set36 |NA    |1     |2         |     1407|      167|
## |AALS-Set36 |NA    |1     |3         |     1379|      177|
## |AALS-Set36 |NA    |1     |4         |     1291|      197|
## |AALS-Set36 |NA    |1     |5         |     1204|      302|
## |AALS-Set36 |NA    |1     |6         |     1161|      343|
## |AALS-Set36 |NA    |1     |7         |     1250|      323|
## |AALS-Set36 |NA    |1     |8         |     1122|      389|
## |AALS-Set41 |NA    |1     |1         |      704|       32|
## |AALS-Set41 |NA    |1     |2         |      709|       57|
## |AALS-Set41 |NA    |1     |4         |      545|      101|
## |AALS-Set41 |NA    |1     |5         |      658|      120|
## |AALS-Set41 |NA    |1     |8         |      357|      127|
## |AALS-Set41 |NA    |1     |9         |      308|      113|
## |AALS-Set44 |NA    |1     |1         |      647|      245|
## |AALS-Set44 |NA    |1     |2         |     1163|       72|
## |AALS-Set44 |NA    |1     |3         |     1283|       73|
## |AALS-Set44 |NA    |1     |4         |     1262|       83|
## |AALS-Set44 |NA    |1     |5         |      786|      144|
## |AALS-Set44 |NA    |1     |8         |      735|      124|
## |AALS-Set8  |NA    |0     |1         |     4639|       70|
## |AALS-Set8  |NA    |0     |2         |     4800|       69|
## |AALS-Set8  |NA    |0     |3         |     5445|       60|
## |AALS-Set8  |NA    |0     |4         |     5499|       59|
## |AALS-Set8  |NA    |0     |5         |     5431|       70|
## |AALS-Set8  |NA    |0     |6         |     5246|       75|
## |AALS-Set8  |NA    |0     |7         |     5245|       94|
## |AALS-Set8  |NA    |0     |8         |     5116|      160|
## |AALS-Set8  |NA    |1     |1         |     7455|      253|
## |AALS-Set8  |NA    |1     |2         |     8152|      231|
## |AALS-Set8  |NA    |1     |3         |     9840|      212|
## |AALS-Set8  |NA    |1     |4         |    11006|      255|
## |AALS-Set8  |NA    |1     |5         |    11166|      253|
## |AALS-Set8  |NA    |1     |6         |    11966|      263|
## |AALS-Set8  |NA    |1     |7         |    12090|      434|
## |AALS-Set8  |NA    |1     |8         |    11996|      739|
## 
## 
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |AALS-Set10 |    76312|     1525|
## |AALS-Set11 |    26701|     4343|
## |AALS-Set12 |    34138|     1624|
## |AALS-Set13 |   127575|    15524|
## |AALS-Set18 |    44808|     6146|
## |AALS-Set20 |   266299|    63181|
## |AALS-Set21 |    39434|     2669|
## |AALS-Set22 |    37942|     1927|
## |AALS-Set26 |    30709|     4664|
## |AALS-Set29 |    32103|     2220|
## |AALS-Set33 |     7225|     1077|
## |AALS-Set34 |     1225|       74|
## |AALS-Set35 |     7274|      280|
## |AALS-Set36 |    25345|     2688|
## |AALS-Set41 |     3281|      550|
## |AALS-Set44 |     5876|      741|
## |AALS-Set8  |   125092|     3297|

————————————————————————

Odds Ratio Comparing Class:

Odds Ratio Comparing: 0 vs 1 with no drug

[1] “Overall significance (p-value) of association across all time-points = 2.42655107333943e-19”

[1] “Akaike Information Criterion (AIC) = 53183.7112055467”

glm - 0 vs 1
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.0691319 0.2893086 -10.6085054 0.0000000
Class1 0.3902162 0.3435461 1.1358481 0.2560202
Timepoint2 0.0308104 0.0205396 1.5000514 0.1336011
Timepoint3 0.1836809 0.0197919 9.2806055 0.0000000
Timepoint4 0.2480459 0.0194291 12.7667398 0.0000000
Timepoint5 0.3491338 0.0192285 18.1570835 0.0000000
Timepoint6 0.5359314 0.0187070 28.6487793 0.0000000
Timepoint7 0.7425442 0.0183534 40.4582019 0.0000000
Timepoint8 0.9890899 0.0181328 54.5470744 0.0000000
Timepoint9 0.9375646 0.0267235 35.0839218 0.0000000
Timepoint11 1.5821450 0.0384969 41.0979530 0.0000000
Class1:Timepoint2 0.0389488 0.0332041 1.1730097 0.2407919
Class1:Timepoint3 0.0187020 0.0322358 0.5801618 0.5618055
Class1:Timepoint4 -0.0651987 0.0319348 -2.0416197 0.0411893
Class1:Timepoint5 -0.0280030 0.0313760 -0.8924990 0.3721255
Class1:Timepoint6 -0.0927057 0.0308690 -3.0031964 0.0026716
Class1:Timepoint7 -0.0680051 0.0303084 -2.2437675 0.0248474
Class1:Timepoint8 -0.1602318 0.0297891 -5.3788824 0.0000001
Class1:Timepoint9 0.1709257 0.0468712 3.6467107 0.0002656
Class1:Timepoint11 -0.1087656 0.0714862 -1.5214900 0.1281369
OR Time lower upper lower99 upper99 pvalue Reference Compare
1.477300 0 0.7534187 2.896684 0.6099276 3.578156 0.2560202 0 1
1.535974 1 0.7835244 3.011033 0.6343458 3.719135 0.2114267 0 1
1.505189 2 0.7679609 2.950141 0.6217813 3.643713 0.2336451 0 1
1.384055 3 0.7061890 2.712599 0.5717756 3.350279 0.3437844 0 1
1.436505 4 0.7330231 2.815119 0.5935206 3.476791 0.2913280 0 1
1.346502 5 0.6871649 2.638477 0.5564071 3.258530 0.3860259 0 1
1.380176 6 0.7044344 2.704136 0.5704120 3.339492 0.3477388 0 1
1.258580 7 0.6424285 2.465682 0.5202172 3.044929 0.5026635 0 1
1.752673 8 0.8914538 3.445902 0.7210638 4.260181 0.1037637 0 1
1.325051 9 0.6683646 2.626948 0.5392044 3.256203 0.4202097 0 1
OR Time lower upper lower99 upper99
1.440201 4.5 0.7337962 2.826672 0.5938655 3.492741

First half Mean

OR Time lower upper lower99 upper99
1.467805 2 0.7488232 2.877115 0.6062702 3.553615

Second half Mean

OR Time lower upper lower99 upper99
1.412597 7 0.7187692 2.776229 0.5814609 3.431867

Odds Ratio Comparing: 1 vs 0 with no drug

[1] “Overall significance (p-value) of association across all time-points = 2.42657255309727e-19”

[1] “Akaike Information Criterion (AIC) = 53183.7112245892”

glm - 1 vs 0
Estimate Std. Error z value Pr(>|z|)
(Intercept) -2.6788869 0.2894821 -9.2540663 0.0000000
Class0 -0.3902656 0.3430547 -1.1376193 0.2552795
Timepoint2 0.0697237 0.0260884 2.6726001 0.0075266
Timepoint3 0.2022914 0.0254438 7.9505191 0.0000000
Timepoint4 0.1827744 0.0253469 7.2109303 0.0000000
Timepoint5 0.3210568 0.0247952 12.9483550 0.0000000
Timepoint6 0.4431769 0.0245549 18.0484054 0.0000000
Timepoint7 0.6744890 0.0241191 27.9649857 0.0000000
Timepoint8 0.8288107 0.0236346 35.0677499 0.0000000
Timepoint9 1.1084424 0.0385751 28.7346770 0.0000000
Timepoint11 1.4733540 0.0604896 24.3571588 0.0000000
Class0:Timepoint2 -0.0389089 0.0332035 -1.1718323 0.2412644
Class0:Timepoint3 -0.0185770 0.0322349 -0.5763024 0.5644108
Class0:Timepoint4 0.0652901 0.0319341 2.0445258 0.0409016
Class0:Timepoint5 0.0280913 0.0313747 0.8953484 0.3706009
Class0:Timepoint6 0.0927633 0.0308680 3.0051581 0.0026544
Class0:Timepoint7 0.0680624 0.0303071 2.2457612 0.0247193
Class0:Timepoint8 0.1602932 0.0297880 5.3811328 0.0000001
Class0:Timepoint9 -0.1708688 0.0468693 -3.6456413 0.0002667
Class0:Timepoint11 0.1087885 0.0714842 1.5218532 0.1280459
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.6768771 0 0.3455379 1.325940 0.2798136 1.637385 0.2552795 1 0
0.6510463 1 0.3324287 1.275044 0.2692175 1.574420 0.2107632 1 0
0.6644188 2 0.3393205 1.300989 0.2748150 1.606361 0.2330591 1 0
0.7225450 3 0.3690223 1.414742 0.2988746 1.746790 0.3431527 1 0
0.6961610 4 0.3555819 1.362950 0.2879979 1.682791 0.2906868 1 0
0.7426708 5 0.3793752 1.453864 0.3072784 1.794985 0.3853575 1 0
0.7245510 6 0.3701640 1.418220 0.2998292 1.750911 0.3470581 1 0
0.7945555 7 0.4059641 1.555109 0.3288359 1.919858 0.5020712 1 0
0.5705615 8 0.2904772 1.120709 0.2350261 1.385124 0.1032841 1 0
0.7546682 9 0.3810211 1.494731 0.3074810 1.852225 0.4195211 1 0
OR Time lower upper lower99 upper99
0.6998055 4.5 0.3568893 1.37223 0.2889169 1.695085

First half Mean

OR Time lower upper lower99 upper99
0.6822096 2 0.3483783 1.335933 0.2821437 1.649549

Second half Mean

OR Time lower upper lower99 upper99
0.7174014 7 0.3654003 1.408527 0.2956901 1.740621

[1] TRUE TRUE

Odds Ratio Combined

Reference condition: 0

Odds Ratio Combined

Reference condition: 1

] NULL

[[2]] NULL