MRID Logodd
Julia Kaye
Thomas Reuben
Stephanie Lam
2025-07-11
Last code update: Feb 8, 202s4
User Inputs
source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/Combined_NonLinear Code/sALS low islet1
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/Combined_NonLinear Code/sALS low islet1
drug: FALSE
drug kept: None
line kept: 7PFJiCTR, 6ZKZiCTR, 2AE8iCTR, 4HUAiALS, 5GBQiALS,
0XLRiALS
multiple_experiments: TRUE
multiple_plates <- FALSE
compare_cellline <- FALSE
compare_class <- TRUE
compare_drug <-FALSE
reference conditions:
##
##
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |AALS-Set10 |NA |0XLRiALS | 18270| 631|
## |AALS-Set10 |NA |2AE8iCTR | 43784| 492|
## |AALS-Set10 |NA |5GBQiALS | 14258| 402|
## |AALS-Set11 |NA |2AE8iCTR | 18734| 2102|
## |AALS-Set11 |NA |5GBQiALS | 7967| 2241|
## |AALS-Set12 |NA |2AE8iCTR | 17524| 1090|
## |AALS-Set12 |NA |5GBQiALS | 16614| 534|
## |AALS-Set13 |NA |0XLRiALS | 52780| 7013|
## |AALS-Set13 |NA |2AE8iCTR | 52810| 4391|
## |AALS-Set13 |NA |5GBQiALS | 21985| 4120|
## |AALS-Set18 |NA |6ZKZiCTR | 24538| 2934|
## |AALS-Set18 |NA |7PFJiCTR | 20270| 3212|
## |AALS-Set20 |NA |0XLRiALS | 71762| 15035|
## |AALS-Set20 |NA |2AE8iCTR | 79112| 13995|
## |AALS-Set20 |NA |6ZKZiCTR | 62365| 14876|
## |AALS-Set20 |NA |7PFJiCTR | 53060| 19275|
## |AALS-Set21 |NA |2AE8iCTR | 39434| 2669|
## |AALS-Set22 |NA |2AE8iCTR | 37942| 1927|
## |AALS-Set26 |NA |0XLRiALS | 7019| 1154|
## |AALS-Set26 |NA |2AE8iCTR | 16131| 900|
## |AALS-Set26 |NA |7PFJiCTR | 7559| 2610|
## |AALS-Set29 |NA |0XLRiALS | 16325| 1183|
## |AALS-Set29 |NA |2AE8iCTR | 5847| 404|
## |AALS-Set29 |NA |7PFJiCTR | 9931| 633|
## |AALS-Set33 |NA |0XLRiALS | 7225| 1077|
## |AALS-Set34 |NA |0XLRiALS | 1225| 74|
## |AALS-Set35 |NA |0XLRiALS | 7274| 280|
## |AALS-Set36 |NA |2AE8iCTR | 15130| 646|
## |AALS-Set36 |NA |4HUAiALS | 10215| 2042|
## |AALS-Set41 |NA |4HUAiALS | 3281| 550|
## |AALS-Set44 |NA |4HUAiALS | 5876| 741|
## |AALS-Set8 |NA |0XLRiALS | 74055| 2195|
## |AALS-Set8 |NA |2AE8iCTR | 41421| 657|
## |AALS-Set8 |NA |5GBQiALS | 9616| 445|##
##
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |AALS-Set10 |NA |0XLRiALS |1 |0 | 2016| 25|
## |AALS-Set10 |NA |0XLRiALS |2 |24 | 2238| 31|
## |AALS-Set10 |NA |0XLRiALS |3 |48 | 2439| 45|
## |AALS-Set10 |NA |0XLRiALS |4 |72 | 2448| 32|
## |AALS-Set10 |NA |0XLRiALS |5 |96 | 2310| 26|
## |AALS-Set10 |NA |0XLRiALS |6 |120 | 2246| 33|
## |AALS-Set10 |NA |0XLRiALS |7 |144 | 2219| 73|
## |AALS-Set10 |NA |0XLRiALS |8 |168 | 1430| 153|
## |AALS-Set10 |NA |0XLRiALS |9 |192 | 924| 213|
## |AALS-Set10 |NA |2AE8iCTR |1 |0 | 4231| 57|
## |AALS-Set10 |NA |2AE8iCTR |2 |24 | 5027| 51|
## |AALS-Set10 |NA |2AE8iCTR |3 |48 | 5492| 49|
## |AALS-Set10 |NA |2AE8iCTR |4 |72 | 6101| 49|
## |AALS-Set10 |NA |2AE8iCTR |5 |96 | 5409| 44|
## |AALS-Set10 |NA |2AE8iCTR |6 |120 | 4980| 66|
## |AALS-Set10 |NA |2AE8iCTR |7 |144 | 4561| 66|
## |AALS-Set10 |NA |2AE8iCTR |8 |168 | 4114| 49|
## |AALS-Set10 |NA |2AE8iCTR |9 |192 | 3869| 61|
## |AALS-Set10 |NA |5GBQiALS |1 |0 | 1360| 18|
## |AALS-Set10 |NA |5GBQiALS |2 |24 | 1504| 22|
## |AALS-Set10 |NA |5GBQiALS |3 |48 | 1694| 34|
## |AALS-Set10 |NA |5GBQiALS |4 |72 | 1699| 29|
## |AALS-Set10 |NA |5GBQiALS |5 |96 | 1657| 35|
## |AALS-Set10 |NA |5GBQiALS |6 |120 | 1689| 32|
## |AALS-Set10 |NA |5GBQiALS |7 |144 | 1684| 53|
## |AALS-Set10 |NA |5GBQiALS |8 |168 | 1566| 93|
## |AALS-Set10 |NA |5GBQiALS |9 |192 | 1405| 86|
## |AALS-Set11 |NA |2AE8iCTR |1 |0 | 1680| 101|
## |AALS-Set11 |NA |2AE8iCTR |2 |24 | 2020| 143|
## |AALS-Set11 |NA |2AE8iCTR |3 |48 | 1968| 201|
## |AALS-Set11 |NA |2AE8iCTR |4 |72 | 2243| 177|
## |AALS-Set11 |NA |2AE8iCTR |5 |96 | 2323| 213|
## |AALS-Set11 |NA |2AE8iCTR |6 |120 | 2118| 262|
## |AALS-Set11 |NA |2AE8iCTR |7 |144 | 2049| 392|
## |AALS-Set11 |NA |2AE8iCTR |8 |168 | 2043| 340|
## |AALS-Set11 |NA |2AE8iCTR |9 |192 | 2290| 273|
## |AALS-Set11 |NA |5GBQiALS |1 |0 | 605| 89|
## |AALS-Set11 |NA |5GBQiALS |2 |24 | 673| 214|
## |AALS-Set11 |NA |5GBQiALS |3 |48 | 678| 242|
## |AALS-Set11 |NA |5GBQiALS |4 |72 | 888| 193|
## |AALS-Set11 |NA |5GBQiALS |5 |96 | 879| 253|
## |AALS-Set11 |NA |5GBQiALS |6 |120 | 928| 330|
## |AALS-Set11 |NA |5GBQiALS |7 |144 | 952| 409|
## |AALS-Set11 |NA |5GBQiALS |8 |168 | 1165| 235|
## |AALS-Set11 |NA |5GBQiALS |9 |192 | 1199| 276|
## |AALS-Set12 |NA |2AE8iCTR |1 |0 | 2225| 49|
## |AALS-Set12 |NA |2AE8iCTR |2 |24 | 2465| 48|
## |AALS-Set12 |NA |2AE8iCTR |3 |48 | 2674| 43|
## |AALS-Set12 |NA |2AE8iCTR |4 |72 | 1848| 64|
## |AALS-Set12 |NA |2AE8iCTR |5 |96 | 1697| 106|
## |AALS-Set12 |NA |2AE8iCTR |6 |120 | 1558| 136|
## |AALS-Set12 |NA |2AE8iCTR |7 |144 | 2042| 132|
## |AALS-Set12 |NA |2AE8iCTR |8 |168 | 1448| 211|
## |AALS-Set12 |NA |2AE8iCTR |9 |192 | 1567| 301|
## |AALS-Set12 |NA |5GBQiALS |1 |0 | 1932| 43|
## |AALS-Set12 |NA |5GBQiALS |2 |24 | 2344| 39|
## |AALS-Set12 |NA |5GBQiALS |3 |48 | 2187| 44|
## |AALS-Set12 |NA |5GBQiALS |4 |72 | 1758| 63|
## |AALS-Set12 |NA |5GBQiALS |5 |96 | 1696| 56|
## |AALS-Set12 |NA |5GBQiALS |6 |120 | 1650| 70|
## |AALS-Set12 |NA |5GBQiALS |7 |144 | 1984| 39|
## |AALS-Set12 |NA |5GBQiALS |8 |168 | 1540| 70|
## |AALS-Set12 |NA |5GBQiALS |9 |192 | 1523| 110|
## |AALS-Set13 |NA |0XLRiALS |1 |0 | 6710| 407|
## |AALS-Set13 |NA |0XLRiALS |2 |24 | 7029| 569|
## |AALS-Set13 |NA |0XLRiALS |3 |48 | 7419| 927|
## |AALS-Set13 |NA |0XLRiALS |4 |72 | 7404| 870|
## |AALS-Set13 |NA |0XLRiALS |5 |96 | 6754| 977|
## |AALS-Set13 |NA |0XLRiALS |6 |120 | 6458| 1106|
## |AALS-Set13 |NA |0XLRiALS |7 |144 | 5962| 1164|
## |AALS-Set13 |NA |0XLRiALS |8 |168 | 5044| 993|
## |AALS-Set13 |NA |2AE8iCTR |1 |0 | 6393| 295|
## |AALS-Set13 |NA |2AE8iCTR |2 |24 | 6516| 400|
## |AALS-Set13 |NA |2AE8iCTR |3 |48 | 6855| 579|
## |AALS-Set13 |NA |2AE8iCTR |4 |72 | 7126| 458|
## |AALS-Set13 |NA |2AE8iCTR |5 |96 | 6876| 602|
## |AALS-Set13 |NA |2AE8iCTR |6 |120 | 6640| 614|
## |AALS-Set13 |NA |2AE8iCTR |7 |144 | 6601| 629|
## |AALS-Set13 |NA |2AE8iCTR |8 |168 | 5803| 814|
## |AALS-Set13 |NA |5GBQiALS |1 |0 | 3475| 379|
## |AALS-Set13 |NA |5GBQiALS |2 |24 | 3196| 435|
## |AALS-Set13 |NA |5GBQiALS |3 |48 | 3220| 557|
## |AALS-Set13 |NA |5GBQiALS |4 |72 | 3290| 523|
## |AALS-Set13 |NA |5GBQiALS |5 |96 | 2765| 512|
## |AALS-Set13 |NA |5GBQiALS |6 |120 | 2419| 543|
## |AALS-Set13 |NA |5GBQiALS |7 |144 | 2032| 658|
## |AALS-Set13 |NA |5GBQiALS |8 |168 | 1588| 513|
## |AALS-Set18 |NA |6ZKZiCTR |1 |0 | 2172| 258|
## |AALS-Set18 |NA |6ZKZiCTR |2 |24 | 2290| 278|
## |AALS-Set18 |NA |6ZKZiCTR |3 |48 | 2657| 295|
## |AALS-Set18 |NA |6ZKZiCTR |4 |72 | 2794| 316|
## |AALS-Set18 |NA |6ZKZiCTR |5 |96 | 3052| 353|
## |AALS-Set18 |NA |6ZKZiCTR |6 |120 | 2817| 340|
## |AALS-Set18 |NA |6ZKZiCTR |7 |144 | 3035| 373|
## |AALS-Set18 |NA |6ZKZiCTR |8 |168 | 3138| 386|
## |AALS-Set18 |NA |6ZKZiCTR |9 |192 | 2583| 335|
## |AALS-Set18 |NA |7PFJiCTR |1 |0 | 1890| 288|
## |AALS-Set18 |NA |7PFJiCTR |2 |24 | 2027| 317|
## |AALS-Set18 |NA |7PFJiCTR |3 |48 | 2308| 373|
## |AALS-Set18 |NA |7PFJiCTR |4 |72 | 2233| 402|
## |AALS-Set18 |NA |7PFJiCTR |5 |96 | 2290| 428|
## |AALS-Set18 |NA |7PFJiCTR |6 |120 | 2435| 298|
## |AALS-Set18 |NA |7PFJiCTR |7 |144 | 2189| 364|
## |AALS-Set18 |NA |7PFJiCTR |8 |168 | 2183| 451|
## |AALS-Set18 |NA |7PFJiCTR |9 |192 | 2715| 291|
## |AALS-Set20 |NA |0XLRiALS |1 |0 | 5929| 991|
## |AALS-Set20 |NA |0XLRiALS |2 |24 | 7783| 1388|
## |AALS-Set20 |NA |0XLRiALS |3 |48 | 8923| 1659|
## |AALS-Set20 |NA |0XLRiALS |4 |72 | 10014| 1823|
## |AALS-Set20 |NA |0XLRiALS |5 |96 | 10003| 1857|
## |AALS-Set20 |NA |0XLRiALS |6 |120 | 10069| 1989|
## |AALS-Set20 |NA |0XLRiALS |7 |144 | 9775| 2440|
## |AALS-Set20 |NA |0XLRiALS |8 |168 | 9266| 2888|
## |AALS-Set20 |NA |2AE8iCTR |1 |0 | 8606| 802|
## |AALS-Set20 |NA |2AE8iCTR |2 |24 | 10058| 1043|
## |AALS-Set20 |NA |2AE8iCTR |3 |48 | 10329| 1246|
## |AALS-Set20 |NA |2AE8iCTR |4 |72 | 10766| 1601|
## |AALS-Set20 |NA |2AE8iCTR |5 |96 | 10365| 1782|
## |AALS-Set20 |NA |2AE8iCTR |6 |120 | 10311| 2111|
## |AALS-Set20 |NA |2AE8iCTR |7 |144 | 9679| 2448|
## |AALS-Set20 |NA |2AE8iCTR |8 |168 | 8998| 2962|
## |AALS-Set20 |NA |6ZKZiCTR |1 |0 | 6107| 1199|
## |AALS-Set20 |NA |6ZKZiCTR |2 |24 | 6619| 1297|
## |AALS-Set20 |NA |6ZKZiCTR |3 |48 | 7272| 1661|
## |AALS-Set20 |NA |6ZKZiCTR |4 |72 | 8133| 1747|
## |AALS-Set20 |NA |6ZKZiCTR |5 |96 | 8352| 1902|
## |AALS-Set20 |NA |6ZKZiCTR |6 |120 | 8686| 2042|
## |AALS-Set20 |NA |6ZKZiCTR |7 |144 | 8712| 2364|
## |AALS-Set20 |NA |6ZKZiCTR |8 |168 | 8484| 2664|
## |AALS-Set20 |NA |7PFJiCTR |1 |0 | 6143| 1439|
## |AALS-Set20 |NA |7PFJiCTR |2 |24 | 6856| 1633|
## |AALS-Set20 |NA |7PFJiCTR |3 |48 | 6913| 1941|
## |AALS-Set20 |NA |7PFJiCTR |4 |72 | 7559| 2362|
## |AALS-Set20 |NA |7PFJiCTR |5 |96 | 7225| 2147|
## |AALS-Set20 |NA |7PFJiCTR |6 |120 | 7047| 2888|
## |AALS-Set20 |NA |7PFJiCTR |7 |144 | 6212| 3286|
## |AALS-Set20 |NA |7PFJiCTR |8 |168 | 5105| 3579|
## |AALS-Set21 |NA |2AE8iCTR |1 |0 | 4213| 145|
## |AALS-Set21 |NA |2AE8iCTR |2 |24 | 4357| 153|
## |AALS-Set21 |NA |2AE8iCTR |3 |48 | 4701| 174|
## |AALS-Set21 |NA |2AE8iCTR |4 |72 | 4575| 119|
## |AALS-Set21 |NA |2AE8iCTR |5 |96 | 4254| 201|
## |AALS-Set21 |NA |2AE8iCTR |6 |120 | 4401| 237|
## |AALS-Set21 |NA |2AE8iCTR |7 |144 | 4059| 301|
## |AALS-Set21 |NA |2AE8iCTR |8 |168 | 2745| 492|
## |AALS-Set21 |NA |2AE8iCTR |9 |192 | 3086| 423|
## |AALS-Set21 |NA |2AE8iCTR |11 |216 | 3043| 424|
## |AALS-Set22 |NA |2AE8iCTR |1 |0 | 5663| 38|
## |AALS-Set22 |NA |2AE8iCTR |2 |24 | 6091| 71|
## |AALS-Set22 |NA |2AE8iCTR |3 |48 | 4771| 69|
## |AALS-Set22 |NA |2AE8iCTR |4 |72 | 5026| 84|
## |AALS-Set22 |NA |2AE8iCTR |5 |96 | 3912| 106|
## |AALS-Set22 |NA |2AE8iCTR |6 |120 | 3471| 156|
## |AALS-Set22 |NA |2AE8iCTR |7 |144 | 3221| 204|
## |AALS-Set22 |NA |2AE8iCTR |8 |168 | 1548| 340|
## |AALS-Set22 |NA |2AE8iCTR |9 |192 | 2029| 361|
## |AALS-Set22 |NA |2AE8iCTR |11 |216 | 2210| 498|
## |AALS-Set26 |NA |0XLRiALS |1 |0 | 1017| 52|
## |AALS-Set26 |NA |0XLRiALS |2 |24 | 1102| 50|
## |AALS-Set26 |NA |0XLRiALS |3 |48 | 1016| 46|
## |AALS-Set26 |NA |0XLRiALS |4 |72 | 881| 66|
## |AALS-Set26 |NA |0XLRiALS |5 |96 | 850| 99|
## |AALS-Set26 |NA |0XLRiALS |6 |120 | 643| 179|
## |AALS-Set26 |NA |0XLRiALS |7 |144 | 488| 227|
## |AALS-Set26 |NA |0XLRiALS |8 |168 | 515| 219|
## |AALS-Set26 |NA |0XLRiALS |9 |192 | 507| 216|
## |AALS-Set26 |NA |2AE8iCTR |1 |0 | 2018| 69|
## |AALS-Set26 |NA |2AE8iCTR |2 |24 | 2366| 53|
## |AALS-Set26 |NA |2AE8iCTR |3 |48 | 2260| 55|
## |AALS-Set26 |NA |2AE8iCTR |4 |72 | 2040| 62|
## |AALS-Set26 |NA |2AE8iCTR |5 |96 | 1995| 80|
## |AALS-Set26 |NA |2AE8iCTR |6 |120 | 1405| 121|
## |AALS-Set26 |NA |2AE8iCTR |7 |144 | 1184| 157|
## |AALS-Set26 |NA |2AE8iCTR |8 |168 | 1360| 159|
## |AALS-Set26 |NA |2AE8iCTR |9 |192 | 1503| 144|
## |AALS-Set26 |NA |7PFJiCTR |1 |0 | 1124| 198|
## |AALS-Set26 |NA |7PFJiCTR |2 |24 | 1167| 136|
## |AALS-Set26 |NA |7PFJiCTR |3 |48 | 1051| 138|
## |AALS-Set26 |NA |7PFJiCTR |4 |72 | 890| 183|
## |AALS-Set26 |NA |7PFJiCTR |5 |96 | 834| 218|
## |AALS-Set26 |NA |7PFJiCTR |6 |120 | 614| 411|
## |AALS-Set26 |NA |7PFJiCTR |7 |144 | 565| 508|
## |AALS-Set26 |NA |7PFJiCTR |8 |168 | 629| 429|
## |AALS-Set26 |NA |7PFJiCTR |9 |192 | 685| 389|
## |AALS-Set29 |NA |0XLRiALS |1 |0 | 2769| 90|
## |AALS-Set29 |NA |0XLRiALS |2 |24 | 2256| 94|
## |AALS-Set29 |NA |0XLRiALS |3 |48 | 2478| 107|
## |AALS-Set29 |NA |0XLRiALS |6 |120 | 1621| 125|
## |AALS-Set29 |NA |0XLRiALS |7 |144 | 1899| 151|
## |AALS-Set29 |NA |0XLRiALS |8 |168 | 1874| 164|
## |AALS-Set29 |NA |0XLRiALS |9 |192 | 1738| 216|
## |AALS-Set29 |NA |0XLRiALS |11 |216 | 1690| 236|
## |AALS-Set29 |NA |2AE8iCTR |1 |0 | 1008| 37|
## |AALS-Set29 |NA |2AE8iCTR |2 |24 | 784| 33|
## |AALS-Set29 |NA |2AE8iCTR |3 |48 | 927| 26|
## |AALS-Set29 |NA |2AE8iCTR |6 |120 | 561| 43|
## |AALS-Set29 |NA |2AE8iCTR |7 |144 | 675| 62|
## |AALS-Set29 |NA |2AE8iCTR |8 |168 | 671| 62|
## |AALS-Set29 |NA |2AE8iCTR |9 |192 | 600| 70|
## |AALS-Set29 |NA |2AE8iCTR |11 |216 | 621| 71|
## |AALS-Set29 |NA |7PFJiCTR |1 |0 | 1338| 34|
## |AALS-Set29 |NA |7PFJiCTR |2 |24 | 1236| 35|
## |AALS-Set29 |NA |7PFJiCTR |3 |48 | 1354| 33|
## |AALS-Set29 |NA |7PFJiCTR |6 |120 | 1102| 68|
## |AALS-Set29 |NA |7PFJiCTR |7 |144 | 1241| 105|
## |AALS-Set29 |NA |7PFJiCTR |8 |168 | 1290| 82|
## |AALS-Set29 |NA |7PFJiCTR |9 |192 | 1211| 131|
## |AALS-Set29 |NA |7PFJiCTR |11 |216 | 1159| 145|
## |AALS-Set33 |NA |0XLRiALS |1 |0 | 1491| 217|
## |AALS-Set33 |NA |0XLRiALS |2 |24 | 1362| 204|
## |AALS-Set33 |NA |0XLRiALS |5 |96 | 1178| 115|
## |AALS-Set33 |NA |0XLRiALS |6 |120 | 1198| 75|
## |AALS-Set33 |NA |0XLRiALS |8 |168 | 801| 107|
## |AALS-Set33 |NA |0XLRiALS |9 |192 | 631| 116|
## |AALS-Set33 |NA |0XLRiALS |11 |216 | 564| 243|
## |AALS-Set34 |NA |0XLRiALS |1 |0 | 269| 17|
## |AALS-Set34 |NA |0XLRiALS |5 |96 | 299| 14|
## |AALS-Set34 |NA |0XLRiALS |6 |120 | 314| 26|
## |AALS-Set34 |NA |0XLRiALS |8 |168 | 343| 17|
## |AALS-Set35 |NA |0XLRiALS |1 |0 | 968| 26|
## |AALS-Set35 |NA |0XLRiALS |2 |24 | 884| 29|
## |AALS-Set35 |NA |0XLRiALS |3 |48 | 1030| 39|
## |AALS-Set35 |NA |0XLRiALS |4 |72 | 973| 37|
## |AALS-Set35 |NA |0XLRiALS |5 |96 | 923| 32|
## |AALS-Set35 |NA |0XLRiALS |6 |120 | 851| 47|
## |AALS-Set35 |NA |0XLRiALS |7 |144 | 756| 43|
## |AALS-Set35 |NA |0XLRiALS |8 |168 | 889| 27|
## |AALS-Set36 |NA |2AE8iCTR |1 |0 | 1784| 65|
## |AALS-Set36 |NA |2AE8iCTR |2 |24 | 2024| 50|
## |AALS-Set36 |NA |2AE8iCTR |3 |48 | 1754| 59|
## |AALS-Set36 |NA |2AE8iCTR |4 |72 | 2094| 96|
## |AALS-Set36 |NA |2AE8iCTR |5 |96 | 2104| 88|
## |AALS-Set36 |NA |2AE8iCTR |6 |120 | 2041| 104|
## |AALS-Set36 |NA |2AE8iCTR |7 |144 | 1658| 97|
## |AALS-Set36 |NA |2AE8iCTR |8 |168 | 1671| 87|
## |AALS-Set36 |NA |4HUAiALS |1 |0 | 1401| 144|
## |AALS-Set36 |NA |4HUAiALS |2 |24 | 1407| 167|
## |AALS-Set36 |NA |4HUAiALS |3 |48 | 1379| 177|
## |AALS-Set36 |NA |4HUAiALS |4 |72 | 1291| 197|
## |AALS-Set36 |NA |4HUAiALS |5 |96 | 1204| 302|
## |AALS-Set36 |NA |4HUAiALS |6 |120 | 1161| 343|
## |AALS-Set36 |NA |4HUAiALS |7 |144 | 1250| 323|
## |AALS-Set36 |NA |4HUAiALS |8 |168 | 1122| 389|
## |AALS-Set41 |NA |4HUAiALS |1 |0 | 704| 32|
## |AALS-Set41 |NA |4HUAiALS |2 |24 | 709| 57|
## |AALS-Set41 |NA |4HUAiALS |4 |72 | 545| 101|
## |AALS-Set41 |NA |4HUAiALS |5 |96 | 658| 120|
## |AALS-Set41 |NA |4HUAiALS |8 |168 | 357| 127|
## |AALS-Set41 |NA |4HUAiALS |9 |192 | 308| 113|
## |AALS-Set44 |NA |4HUAiALS |1 |0 | 647| 245|
## |AALS-Set44 |NA |4HUAiALS |2 |24 | 1163| 72|
## |AALS-Set44 |NA |4HUAiALS |3 |48 | 1283| 73|
## |AALS-Set44 |NA |4HUAiALS |4 |72 | 1262| 83|
## |AALS-Set44 |NA |4HUAiALS |5 |96 | 786| 144|
## |AALS-Set44 |NA |4HUAiALS |8 |168 | 735| 124|
## |AALS-Set8 |NA |0XLRiALS |1 |0 | 6471| 186|
## |AALS-Set8 |NA |0XLRiALS |2 |24 | 7160| 160|
## |AALS-Set8 |NA |0XLRiALS |3 |48 | 8741| 146|
## |AALS-Set8 |NA |0XLRiALS |4 |72 | 9822| 189|
## |AALS-Set8 |NA |0XLRiALS |5 |96 | 9937| 204|
## |AALS-Set8 |NA |0XLRiALS |6 |120 | 10702| 230|
## |AALS-Set8 |NA |0XLRiALS |7 |144 | 10703| 388|
## |AALS-Set8 |NA |0XLRiALS |8 |168 | 10519| 692|
## |AALS-Set8 |NA |2AE8iCTR |1 |0 | 4639| 70|
## |AALS-Set8 |NA |2AE8iCTR |2 |24 | 4800| 69|
## |AALS-Set8 |NA |2AE8iCTR |3 |48 | 5445| 60|
## |AALS-Set8 |NA |2AE8iCTR |4 |72 | 5499| 59|
## |AALS-Set8 |NA |2AE8iCTR |5 |96 | 5431| 70|
## |AALS-Set8 |NA |2AE8iCTR |6 |120 | 5246| 75|
## |AALS-Set8 |NA |2AE8iCTR |7 |144 | 5245| 94|
## |AALS-Set8 |NA |2AE8iCTR |8 |168 | 5116| 160|
## |AALS-Set8 |NA |5GBQiALS |1 |0 | 984| 67|
## |AALS-Set8 |NA |5GBQiALS |2 |24 | 992| 71|
## |AALS-Set8 |NA |5GBQiALS |3 |48 | 1099| 66|
## |AALS-Set8 |NA |5GBQiALS |4 |72 | 1184| 66|
## |AALS-Set8 |NA |5GBQiALS |5 |96 | 1229| 49|
## |AALS-Set8 |NA |5GBQiALS |6 |120 | 1264| 33|
## |AALS-Set8 |NA |5GBQiALS |7 |144 | 1387| 46|
## |AALS-Set8 |NA |5GBQiALS |8 |168 | 1477| 47|##
##
## |Experiment |Plate |Class |Timepoint | sum_live| sum_dead|
## |:----------|:-----|:-----|:---------|--------:|--------:|
## |AALS-Set10 |NA |0 |1 | 4231| 57|
## |AALS-Set10 |NA |0 |2 | 5027| 51|
## |AALS-Set10 |NA |0 |3 | 5492| 49|
## |AALS-Set10 |NA |0 |4 | 6101| 49|
## |AALS-Set10 |NA |0 |5 | 5409| 44|
## |AALS-Set10 |NA |0 |6 | 4980| 66|
## |AALS-Set10 |NA |0 |7 | 4561| 66|
## |AALS-Set10 |NA |0 |8 | 4114| 49|
## |AALS-Set10 |NA |0 |9 | 3869| 61|
## |AALS-Set10 |NA |1 |1 | 3376| 43|
## |AALS-Set10 |NA |1 |2 | 3742| 53|
## |AALS-Set10 |NA |1 |3 | 4133| 79|
## |AALS-Set10 |NA |1 |4 | 4147| 61|
## |AALS-Set10 |NA |1 |5 | 3967| 61|
## |AALS-Set10 |NA |1 |6 | 3935| 65|
## |AALS-Set10 |NA |1 |7 | 3903| 126|
## |AALS-Set10 |NA |1 |8 | 2996| 246|
## |AALS-Set10 |NA |1 |9 | 2329| 299|
## |AALS-Set11 |NA |0 |1 | 1680| 101|
## |AALS-Set11 |NA |0 |2 | 2020| 143|
## |AALS-Set11 |NA |0 |3 | 1968| 201|
## |AALS-Set11 |NA |0 |4 | 2243| 177|
## |AALS-Set11 |NA |0 |5 | 2323| 213|
## |AALS-Set11 |NA |0 |6 | 2118| 262|
## |AALS-Set11 |NA |0 |7 | 2049| 392|
## |AALS-Set11 |NA |0 |8 | 2043| 340|
## |AALS-Set11 |NA |0 |9 | 2290| 273|
## |AALS-Set11 |NA |1 |1 | 605| 89|
## |AALS-Set11 |NA |1 |2 | 673| 214|
## |AALS-Set11 |NA |1 |3 | 678| 242|
## |AALS-Set11 |NA |1 |4 | 888| 193|
## |AALS-Set11 |NA |1 |5 | 879| 253|
## |AALS-Set11 |NA |1 |6 | 928| 330|
## |AALS-Set11 |NA |1 |7 | 952| 409|
## |AALS-Set11 |NA |1 |8 | 1165| 235|
## |AALS-Set11 |NA |1 |9 | 1199| 276|
## |AALS-Set12 |NA |0 |1 | 2225| 49|
## |AALS-Set12 |NA |0 |2 | 2465| 48|
## |AALS-Set12 |NA |0 |3 | 2674| 43|
## |AALS-Set12 |NA |0 |4 | 1848| 64|
## |AALS-Set12 |NA |0 |5 | 1697| 106|
## |AALS-Set12 |NA |0 |6 | 1558| 136|
## |AALS-Set12 |NA |0 |7 | 2042| 132|
## |AALS-Set12 |NA |0 |8 | 1448| 211|
## |AALS-Set12 |NA |0 |9 | 1567| 301|
## |AALS-Set12 |NA |1 |1 | 1932| 43|
## |AALS-Set12 |NA |1 |2 | 2344| 39|
## |AALS-Set12 |NA |1 |3 | 2187| 44|
## |AALS-Set12 |NA |1 |4 | 1758| 63|
## |AALS-Set12 |NA |1 |5 | 1696| 56|
## |AALS-Set12 |NA |1 |6 | 1650| 70|
## |AALS-Set12 |NA |1 |7 | 1984| 39|
## |AALS-Set12 |NA |1 |8 | 1540| 70|
## |AALS-Set12 |NA |1 |9 | 1523| 110|
## |AALS-Set13 |NA |0 |1 | 6393| 295|
## |AALS-Set13 |NA |0 |2 | 6516| 400|
## |AALS-Set13 |NA |0 |3 | 6855| 579|
## |AALS-Set13 |NA |0 |4 | 7126| 458|
## |AALS-Set13 |NA |0 |5 | 6876| 602|
## |AALS-Set13 |NA |0 |6 | 6640| 614|
## |AALS-Set13 |NA |0 |7 | 6601| 629|
## |AALS-Set13 |NA |0 |8 | 5803| 814|
## |AALS-Set13 |NA |1 |1 | 10185| 786|
## |AALS-Set13 |NA |1 |2 | 10225| 1004|
## |AALS-Set13 |NA |1 |3 | 10639| 1484|
## |AALS-Set13 |NA |1 |4 | 10694| 1393|
## |AALS-Set13 |NA |1 |5 | 9519| 1489|
## |AALS-Set13 |NA |1 |6 | 8877| 1649|
## |AALS-Set13 |NA |1 |7 | 7994| 1822|
## |AALS-Set13 |NA |1 |8 | 6632| 1506|
## |AALS-Set18 |NA |0 |1 | 4062| 546|
## |AALS-Set18 |NA |0 |2 | 4317| 595|
## |AALS-Set18 |NA |0 |3 | 4965| 668|
## |AALS-Set18 |NA |0 |4 | 5027| 718|
## |AALS-Set18 |NA |0 |5 | 5342| 781|
## |AALS-Set18 |NA |0 |6 | 5252| 638|
## |AALS-Set18 |NA |0 |7 | 5224| 737|
## |AALS-Set18 |NA |0 |8 | 5321| 837|
## |AALS-Set18 |NA |0 |9 | 5298| 626|
## |AALS-Set20 |NA |0 |1 | 20856| 3440|
## |AALS-Set20 |NA |0 |2 | 23533| 3973|
## |AALS-Set20 |NA |0 |3 | 24514| 4848|
## |AALS-Set20 |NA |0 |4 | 26458| 5710|
## |AALS-Set20 |NA |0 |5 | 25942| 5831|
## |AALS-Set20 |NA |0 |6 | 26044| 7041|
## |AALS-Set20 |NA |0 |7 | 24603| 8098|
## |AALS-Set20 |NA |0 |8 | 22587| 9205|
## |AALS-Set20 |NA |1 |1 | 5929| 991|
## |AALS-Set20 |NA |1 |2 | 7783| 1388|
## |AALS-Set20 |NA |1 |3 | 8923| 1659|
## |AALS-Set20 |NA |1 |4 | 10014| 1823|
## |AALS-Set20 |NA |1 |5 | 10003| 1857|
## |AALS-Set20 |NA |1 |6 | 10069| 1989|
## |AALS-Set20 |NA |1 |7 | 9775| 2440|
## |AALS-Set20 |NA |1 |8 | 9266| 2888|
## |AALS-Set21 |NA |0 |1 | 4213| 145|
## |AALS-Set21 |NA |0 |2 | 4357| 153|
## |AALS-Set21 |NA |0 |3 | 4701| 174|
## |AALS-Set21 |NA |0 |4 | 4575| 119|
## |AALS-Set21 |NA |0 |5 | 4254| 201|
## |AALS-Set21 |NA |0 |6 | 4401| 237|
## |AALS-Set21 |NA |0 |7 | 4059| 301|
## |AALS-Set21 |NA |0 |8 | 2745| 492|
## |AALS-Set21 |NA |0 |9 | 3086| 423|
## |AALS-Set21 |NA |0 |11 | 3043| 424|
## |AALS-Set22 |NA |0 |1 | 5663| 38|
## |AALS-Set22 |NA |0 |2 | 6091| 71|
## |AALS-Set22 |NA |0 |3 | 4771| 69|
## |AALS-Set22 |NA |0 |4 | 5026| 84|
## |AALS-Set22 |NA |0 |5 | 3912| 106|
## |AALS-Set22 |NA |0 |6 | 3471| 156|
## |AALS-Set22 |NA |0 |7 | 3221| 204|
## |AALS-Set22 |NA |0 |8 | 1548| 340|
## |AALS-Set22 |NA |0 |9 | 2029| 361|
## |AALS-Set22 |NA |0 |11 | 2210| 498|
## |AALS-Set26 |NA |0 |1 | 3142| 267|
## |AALS-Set26 |NA |0 |2 | 3533| 189|
## |AALS-Set26 |NA |0 |3 | 3311| 193|
## |AALS-Set26 |NA |0 |4 | 2930| 245|
## |AALS-Set26 |NA |0 |5 | 2829| 298|
## |AALS-Set26 |NA |0 |6 | 2019| 532|
## |AALS-Set26 |NA |0 |7 | 1749| 665|
## |AALS-Set26 |NA |0 |8 | 1989| 588|
## |AALS-Set26 |NA |0 |9 | 2188| 533|
## |AALS-Set26 |NA |1 |1 | 1017| 52|
## |AALS-Set26 |NA |1 |2 | 1102| 50|
## |AALS-Set26 |NA |1 |3 | 1016| 46|
## |AALS-Set26 |NA |1 |4 | 881| 66|
## |AALS-Set26 |NA |1 |5 | 850| 99|
## |AALS-Set26 |NA |1 |6 | 643| 179|
## |AALS-Set26 |NA |1 |7 | 488| 227|
## |AALS-Set26 |NA |1 |8 | 515| 219|
## |AALS-Set26 |NA |1 |9 | 507| 216|
## |AALS-Set29 |NA |0 |1 | 2346| 71|
## |AALS-Set29 |NA |0 |2 | 2020| 68|
## |AALS-Set29 |NA |0 |3 | 2281| 59|
## |AALS-Set29 |NA |0 |6 | 1663| 111|
## |AALS-Set29 |NA |0 |7 | 1916| 167|
## |AALS-Set29 |NA |0 |8 | 1961| 144|
## |AALS-Set29 |NA |0 |9 | 1811| 201|
## |AALS-Set29 |NA |0 |11 | 1780| 216|
## |AALS-Set29 |NA |1 |1 | 2769| 90|
## |AALS-Set29 |NA |1 |2 | 2256| 94|
## |AALS-Set29 |NA |1 |3 | 2478| 107|
## |AALS-Set29 |NA |1 |6 | 1621| 125|
## |AALS-Set29 |NA |1 |7 | 1899| 151|
## |AALS-Set29 |NA |1 |8 | 1874| 164|
## |AALS-Set29 |NA |1 |9 | 1738| 216|
## |AALS-Set29 |NA |1 |11 | 1690| 236|
## |AALS-Set33 |NA |1 |1 | 1491| 217|
## |AALS-Set33 |NA |1 |2 | 1362| 204|
## |AALS-Set33 |NA |1 |5 | 1178| 115|
## |AALS-Set33 |NA |1 |6 | 1198| 75|
## |AALS-Set33 |NA |1 |8 | 801| 107|
## |AALS-Set33 |NA |1 |9 | 631| 116|
## |AALS-Set33 |NA |1 |11 | 564| 243|
## |AALS-Set34 |NA |1 |1 | 269| 17|
## |AALS-Set34 |NA |1 |5 | 299| 14|
## |AALS-Set34 |NA |1 |6 | 314| 26|
## |AALS-Set34 |NA |1 |8 | 343| 17|
## |AALS-Set35 |NA |1 |1 | 968| 26|
## |AALS-Set35 |NA |1 |2 | 884| 29|
## |AALS-Set35 |NA |1 |3 | 1030| 39|
## |AALS-Set35 |NA |1 |4 | 973| 37|
## |AALS-Set35 |NA |1 |5 | 923| 32|
## |AALS-Set35 |NA |1 |6 | 851| 47|
## |AALS-Set35 |NA |1 |7 | 756| 43|
## |AALS-Set35 |NA |1 |8 | 889| 27|
## |AALS-Set36 |NA |0 |1 | 1784| 65|
## |AALS-Set36 |NA |0 |2 | 2024| 50|
## |AALS-Set36 |NA |0 |3 | 1754| 59|
## |AALS-Set36 |NA |0 |4 | 2094| 96|
## |AALS-Set36 |NA |0 |5 | 2104| 88|
## |AALS-Set36 |NA |0 |6 | 2041| 104|
## |AALS-Set36 |NA |0 |7 | 1658| 97|
## |AALS-Set36 |NA |0 |8 | 1671| 87|
## |AALS-Set36 |NA |1 |1 | 1401| 144|
## |AALS-Set36 |NA |1 |2 | 1407| 167|
## |AALS-Set36 |NA |1 |3 | 1379| 177|
## |AALS-Set36 |NA |1 |4 | 1291| 197|
## |AALS-Set36 |NA |1 |5 | 1204| 302|
## |AALS-Set36 |NA |1 |6 | 1161| 343|
## |AALS-Set36 |NA |1 |7 | 1250| 323|
## |AALS-Set36 |NA |1 |8 | 1122| 389|
## |AALS-Set41 |NA |1 |1 | 704| 32|
## |AALS-Set41 |NA |1 |2 | 709| 57|
## |AALS-Set41 |NA |1 |4 | 545| 101|
## |AALS-Set41 |NA |1 |5 | 658| 120|
## |AALS-Set41 |NA |1 |8 | 357| 127|
## |AALS-Set41 |NA |1 |9 | 308| 113|
## |AALS-Set44 |NA |1 |1 | 647| 245|
## |AALS-Set44 |NA |1 |2 | 1163| 72|
## |AALS-Set44 |NA |1 |3 | 1283| 73|
## |AALS-Set44 |NA |1 |4 | 1262| 83|
## |AALS-Set44 |NA |1 |5 | 786| 144|
## |AALS-Set44 |NA |1 |8 | 735| 124|
## |AALS-Set8 |NA |0 |1 | 4639| 70|
## |AALS-Set8 |NA |0 |2 | 4800| 69|
## |AALS-Set8 |NA |0 |3 | 5445| 60|
## |AALS-Set8 |NA |0 |4 | 5499| 59|
## |AALS-Set8 |NA |0 |5 | 5431| 70|
## |AALS-Set8 |NA |0 |6 | 5246| 75|
## |AALS-Set8 |NA |0 |7 | 5245| 94|
## |AALS-Set8 |NA |0 |8 | 5116| 160|
## |AALS-Set8 |NA |1 |1 | 7455| 253|
## |AALS-Set8 |NA |1 |2 | 8152| 231|
## |AALS-Set8 |NA |1 |3 | 9840| 212|
## |AALS-Set8 |NA |1 |4 | 11006| 255|
## |AALS-Set8 |NA |1 |5 | 11166| 253|
## |AALS-Set8 |NA |1 |6 | 11966| 263|
## |AALS-Set8 |NA |1 |7 | 12090| 434|
## |AALS-Set8 |NA |1 |8 | 11996| 739|
##
##
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |AALS-Set10 | 76312| 1525|
## |AALS-Set11 | 26701| 4343|
## |AALS-Set12 | 34138| 1624|
## |AALS-Set13 | 127575| 15524|
## |AALS-Set18 | 44808| 6146|
## |AALS-Set20 | 266299| 63181|
## |AALS-Set21 | 39434| 2669|
## |AALS-Set22 | 37942| 1927|
## |AALS-Set26 | 30709| 4664|
## |AALS-Set29 | 32103| 2220|
## |AALS-Set33 | 7225| 1077|
## |AALS-Set34 | 1225| 74|
## |AALS-Set35 | 7274| 280|
## |AALS-Set36 | 25345| 2688|
## |AALS-Set41 | 3281| 550|
## |AALS-Set44 | 5876| 741|
## |AALS-Set8 | 125092| 3297|
————————————————————————
Odds Ratio Comparing Class:
Odds Ratio Comparing: 0 vs 1 with no drug
[1] “Overall significance (p-value) of association across all time-points = 2.42655107333943e-19”
[1] “Akaike Information Criterion (AIC) = 53183.7112055467”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.0691319 | 0.2893086 | -10.6085054 | 0.0000000 |
| Class1 | 0.3902162 | 0.3435461 | 1.1358481 | 0.2560202 |
| Timepoint2 | 0.0308104 | 0.0205396 | 1.5000514 | 0.1336011 |
| Timepoint3 | 0.1836809 | 0.0197919 | 9.2806055 | 0.0000000 |
| Timepoint4 | 0.2480459 | 0.0194291 | 12.7667398 | 0.0000000 |
| Timepoint5 | 0.3491338 | 0.0192285 | 18.1570835 | 0.0000000 |
| Timepoint6 | 0.5359314 | 0.0187070 | 28.6487793 | 0.0000000 |
| Timepoint7 | 0.7425442 | 0.0183534 | 40.4582019 | 0.0000000 |
| Timepoint8 | 0.9890899 | 0.0181328 | 54.5470744 | 0.0000000 |
| Timepoint9 | 0.9375646 | 0.0267235 | 35.0839218 | 0.0000000 |
| Timepoint11 | 1.5821450 | 0.0384969 | 41.0979530 | 0.0000000 |
| Class1:Timepoint2 | 0.0389488 | 0.0332041 | 1.1730097 | 0.2407919 |
| Class1:Timepoint3 | 0.0187020 | 0.0322358 | 0.5801618 | 0.5618055 |
| Class1:Timepoint4 | -0.0651987 | 0.0319348 | -2.0416197 | 0.0411893 |
| Class1:Timepoint5 | -0.0280030 | 0.0313760 | -0.8924990 | 0.3721255 |
| Class1:Timepoint6 | -0.0927057 | 0.0308690 | -3.0031964 | 0.0026716 |
| Class1:Timepoint7 | -0.0680051 | 0.0303084 | -2.2437675 | 0.0248474 |
| Class1:Timepoint8 | -0.1602318 | 0.0297891 | -5.3788824 | 0.0000001 |
| Class1:Timepoint9 | 0.1709257 | 0.0468712 | 3.6467107 | 0.0002656 |
| Class1:Timepoint11 | -0.1087656 | 0.0714862 | -1.5214900 | 0.1281369 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 1.477300 | 0 | 0.7534187 | 2.896684 | 0.6099276 | 3.578156 | 0.2560202 | 0 | 1 |
| 1.535974 | 1 | 0.7835244 | 3.011033 | 0.6343458 | 3.719135 | 0.2114267 | 0 | 1 |
| 1.505189 | 2 | 0.7679609 | 2.950141 | 0.6217813 | 3.643713 | 0.2336451 | 0 | 1 |
| 1.384055 | 3 | 0.7061890 | 2.712599 | 0.5717756 | 3.350279 | 0.3437844 | 0 | 1 |
| 1.436505 | 4 | 0.7330231 | 2.815119 | 0.5935206 | 3.476791 | 0.2913280 | 0 | 1 |
| 1.346502 | 5 | 0.6871649 | 2.638477 | 0.5564071 | 3.258530 | 0.3860259 | 0 | 1 |
| 1.380176 | 6 | 0.7044344 | 2.704136 | 0.5704120 | 3.339492 | 0.3477388 | 0 | 1 |
| 1.258580 | 7 | 0.6424285 | 2.465682 | 0.5202172 | 3.044929 | 0.5026635 | 0 | 1 |
| 1.752673 | 8 | 0.8914538 | 3.445902 | 0.7210638 | 4.260181 | 0.1037637 | 0 | 1 |
| 1.325051 | 9 | 0.6683646 | 2.626948 | 0.5392044 | 3.256203 | 0.4202097 | 0 | 1 |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.440201 | 4.5 | 0.7337962 | 2.826672 | 0.5938655 | 3.492741 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.467805 | 2 | 0.7488232 | 2.877115 | 0.6062702 | 3.553615 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.412597 | 7 | 0.7187692 | 2.776229 | 0.5814609 | 3.431867 |
Odds Ratio Comparing: 1 vs 0 with no drug
[1] “Overall significance (p-value) of association across all time-points = 2.42657255309727e-19”
[1] “Akaike Information Criterion (AIC) = 53183.7112245892”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -2.6788869 | 0.2894821 | -9.2540663 | 0.0000000 |
| Class0 | -0.3902656 | 0.3430547 | -1.1376193 | 0.2552795 |
| Timepoint2 | 0.0697237 | 0.0260884 | 2.6726001 | 0.0075266 |
| Timepoint3 | 0.2022914 | 0.0254438 | 7.9505191 | 0.0000000 |
| Timepoint4 | 0.1827744 | 0.0253469 | 7.2109303 | 0.0000000 |
| Timepoint5 | 0.3210568 | 0.0247952 | 12.9483550 | 0.0000000 |
| Timepoint6 | 0.4431769 | 0.0245549 | 18.0484054 | 0.0000000 |
| Timepoint7 | 0.6744890 | 0.0241191 | 27.9649857 | 0.0000000 |
| Timepoint8 | 0.8288107 | 0.0236346 | 35.0677499 | 0.0000000 |
| Timepoint9 | 1.1084424 | 0.0385751 | 28.7346770 | 0.0000000 |
| Timepoint11 | 1.4733540 | 0.0604896 | 24.3571588 | 0.0000000 |
| Class0:Timepoint2 | -0.0389089 | 0.0332035 | -1.1718323 | 0.2412644 |
| Class0:Timepoint3 | -0.0185770 | 0.0322349 | -0.5763024 | 0.5644108 |
| Class0:Timepoint4 | 0.0652901 | 0.0319341 | 2.0445258 | 0.0409016 |
| Class0:Timepoint5 | 0.0280913 | 0.0313747 | 0.8953484 | 0.3706009 |
| Class0:Timepoint6 | 0.0927633 | 0.0308680 | 3.0051581 | 0.0026544 |
| Class0:Timepoint7 | 0.0680624 | 0.0303071 | 2.2457612 | 0.0247193 |
| Class0:Timepoint8 | 0.1602932 | 0.0297880 | 5.3811328 | 0.0000001 |
| Class0:Timepoint9 | -0.1708688 | 0.0468693 | -3.6456413 | 0.0002667 |
| Class0:Timepoint11 | 0.1087885 | 0.0714842 | 1.5218532 | 0.1280459 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.6768771 | 0 | 0.3455379 | 1.325940 | 0.2798136 | 1.637385 | 0.2552795 | 1 | 0 |
| 0.6510463 | 1 | 0.3324287 | 1.275044 | 0.2692175 | 1.574420 | 0.2107632 | 1 | 0 |
| 0.6644188 | 2 | 0.3393205 | 1.300989 | 0.2748150 | 1.606361 | 0.2330591 | 1 | 0 |
| 0.7225450 | 3 | 0.3690223 | 1.414742 | 0.2988746 | 1.746790 | 0.3431527 | 1 | 0 |
| 0.6961610 | 4 | 0.3555819 | 1.362950 | 0.2879979 | 1.682791 | 0.2906868 | 1 | 0 |
| 0.7426708 | 5 | 0.3793752 | 1.453864 | 0.3072784 | 1.794985 | 0.3853575 | 1 | 0 |
| 0.7245510 | 6 | 0.3701640 | 1.418220 | 0.2998292 | 1.750911 | 0.3470581 | 1 | 0 |
| 0.7945555 | 7 | 0.4059641 | 1.555109 | 0.3288359 | 1.919858 | 0.5020712 | 1 | 0 |
| 0.5705615 | 8 | 0.2904772 | 1.120709 | 0.2350261 | 1.385124 | 0.1032841 | 1 | 0 |
| 0.7546682 | 9 | 0.3810211 | 1.494731 | 0.3074810 | 1.852225 | 0.4195211 | 1 | 0 |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.6998055 | 4.5 | 0.3568893 | 1.37223 | 0.2889169 | 1.695085 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.6822096 | 2 | 0.3483783 | 1.335933 | 0.2821437 | 1.649549 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.7174014 | 7 | 0.3654003 | 1.408527 | 0.2956901 | 1.740621 |
[1] TRUE TRUE
Odds Ratio Combined
Reference condition: 0
Odds Ratio Combined
Reference condition: 1
] NULL
[[2]] NULL